Gene detail

Gene detail information of Glyur001210s00032321

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G09300.1	OSBP(oxysterol binding protein)-related protein 3B
NR	XP_004492360.1	PREDICTED: oxysterol-binding protein-related protein 3A-like [Cicer arietinum]
Swissprot	tr\|Q9LZM1\|ORP3A_ARATH	Oxysterol-binding protein-related protein 3A
trEMBL	tr\|V7B3Y5\|V7B3Y5_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW12270.1}

Sequence

Transcript Sequence

>Glyur001210s00032321.1
CATATTTTAACAAAAATTGAAATGAAAAAAAAAGAGTTAAAAGTTTACAAGATAAAAAATAAATTTTTTTTTACAGGAATAAAAATCAAATAATCTCTTATTTGCGAAAAGTATATTTAAGCCCAAAACACAATTATCAATCAGCACAGCCGGCCGGCAAGGCAGTGAGTGGTACTCCTCNTCATTCCAATCCCATAACAGCACTAGTTGTGTCCCTCGTGACCGCGAAGCCGCCAATTTGGATTCTCCAAAGTTCTCTCATCTCACACACCCCACGCTCTCTCCCAGGCGCGTGCTACACAAACTCATCCATTTTGATTTTTCTAACGTGTCTTGCGTCACCGCTTCAACGAAGAAGAAATATCCTTCTCCCTTCCCCATTCCCTTCCCGTCTCGTTGGACTTTTCAAACTCGAGAACCGCCAACCAAAATCGTTGCTTTTCTTCGCTGTTCTCCCAATATAATAATATTCATTATCATCACTAATTTTTCATTCTATATATATATTTGTTATCATTAATATTTTACCATCCATTTGCTTCGATAGATCGAATACGCACAGAAAAAGCTTCTCTTTTCTCAATTGGGTTTTCTCCAGTTTCCTGAATTTTCCATCGTTGCCATGGCTCCAAAGGATCCCAAGCAAACTGCTGCTACTTCTAGTGGTGGTAGTGGCGGTGGNGGCTTTTTTGCTTCTATTGCTTCCAGTTTGTCCAATTTTGGAAGTGTCATGTCCAAATCTGTTAATGGTTTGGTGCCCTATGAGGGACTGGAGGTTATTAACCCAGAAGGAGGAACTGAAGATGCTGAAGAGGAAGCAAAAAAGGGAAGATGGAAAGAAGAGGAAAGGGATAGTTACTGGAAAATGATGCAAAAATATGTTGGCTCTGACATCACATCGATGGTGACACTTCCAGTTATCATTTTTGAGCCAATGACAATGCTACAAAAAATGGCTGAGCTTATGGAGTACACTTACCTGTTAGATATGGCGGATGAGGCTGAGGATCCATACATGAGACTTATGATTTTTGCAGCATCATTCTTTATATCTGTCTACTATGCCTATCAACGAACGTGGAAGCCATTCAATCCAATTCTTGGTGAGACTTATGAAATGGCTAACCATGGTGGCATAACATTTATAGCAGAGCAGGTCAGTCATCACCCTCCAATGAGTGCTGGGCATGCTGAAAATGAACATTTCACCTATGATGTGACATCAAAACTGAAAACCAAACTTCTTGGCAACTCAGTTGATGTATATCCTGTTGGAAGAACACGTGTTACACTCAAAAGAGACGGTGTGGTCCTTGATTTGGTGCCTCCACCTACCAAAGTCAACAACTTGATTTTCGGACGAACTTGGATCGATTCACCAGGGGAGATGGTCCTGACAAACCTGACTACAGGAGATAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGAGCTGGTCGATATGAAGTGGATGGTTATGTGTATAATGCTGCTGAAGAGCCCAAGATACTGATGACTGGAAGGTGGAATGAGGCTATGAGTTATCAAGTTTGTGACCCAGAGGGAGAACCACTTCCAGGCACTGAGATGAAAGAGGTTTGGAGAGTTGCTGATACTCCCAAAAAGGACAAATTCCAGTACACCTATTTTGCTCACAAGATTAACAGCTTTGACACTGCTCCCAAGAAGTTGCTGGCATCTGATTCTCGTCTTCGTCCCGATAGAATGGCCCTTGAGAAGGGCGACCTATCCNTTTCCGGCAATGAGAAAAGCAGTTTGGAGGAGAGGCAAAGAGCTGAGAAGAGAAGCAGAGAGGCCAAGGGCCATAAGTTCACTCCTAGATGGTTTGATTTAACAGAGGAAGTAACTCCTACACCTTGGGGTGAACTGGAGGTTTACCAATACAACGGTAAATATACCAAACATCGCGCCGCTGTAGATAGTTCTTCTGATTGCATTGAGGAGCCTGAAAGTAGTAGACCAGAATTCAACCCTTGGCAATATGATAATTTGGAAGCTGAATAAGCATTCTTGTGGAATTCTTTTTTTTTTTTTCTTTCTTAACTGCCATTTTGTTATNAAGTTTGTAATGTATCACTTTTTGAATGCTTGGAATTTGATCTTGTATTTTTTTATTTGGGGTTGTATTATGTTATTGTAGCAATATTTGATTAGAATTAATATTAGTTACGTTAATTCCTCAATCCACTTTGCATGGATAAGTGTTAGTAGAGAACTAGAGCTTTATTGCTTCTTGTGNCCTTTCTTGCTCACTTGAATATGTTGAGCCGGTATCGCATATTTACTTAGCCTGTTCTGCTGATGTCCATTTAACTCACAACATGACACTTATTCCATGTAATTTCTCAATTGTAATGAATTTATTTCTCTCTTTTTCTTTTTATCAAACTATTTGTTTGAGTAGAAAATAAAAGAAGAAAAACTGGGTGAAAATTGAGAGAAATATACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01210	14585	20035	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001210s00032321.1	PF01237.13	Oxysterol_BP	78	435	2.00E-101
Glyur001210s00032321.2	PF01237.13	Oxysterol_BP	78	434	4.10E-103

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.061
SRR1783600	control	23.358
SRR1783602	moderate drought stress	31.277
SRR1811619	moderate drought stress	31.035

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.526
DRR006520	Root Summer glycyrrhizin high producing strain	59.626
DRR006521	Root Winter glycyrrhizin high producing strain	92.566
DRR006522	Root Winter glycyrrhizin high producing strain	89.872
DRR006523	Root Summer glycyrrhizin low producing strain	156.294
DRR006524	Root Summer glycyrrhizin low producing strain	155.266
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.788
DRR006526	Leaf Summer glycyrrhizin high producing strain	43.085

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	87.946
SRR2868004	Drought Stress (root)	99.711
SRR2967015	Control (root)	87.895

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	129.589
SRR9715740	Leaf	87.946
SRR9715741	Leaf	222.117
SRR9715739	Root	75.201
SRR9715742	Root	166.570
SRR9715743	Root	145.006

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.255
SRR8749028	MeJA induced 9h	46.539
SRR8749029	MeJA induced 9h	68.971
SRR8749030	Uninduced	84.093
SRR8749031	Uninduced	68.886
SRR8749032	Uninduced	72.436

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.513
SRR8400027	Control - Root	82.307