Gene detail

Gene detail information of Glyur001208s00036579

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46210.1	0	Fatty acid/sphingolipid desaturase
NR	XP_004511216.1	0	PREDICTED: delta(8)-fatty-acid desaturase-like [Cicer arietinum]
COG	YP_003382811.1	8.00E-33	fatty acid desaturase [Kribbella flavida DSM 17836]
Swissprot	tr\|Q3EBF7\|SLD2_ARATH	0	Delta(8)-fatty-acid desaturase 2
trEMBL	tr\|G7LAZ0\|G7LAZ0_MEDTR	0	Fatty acid/sphingolipid desaturase {ECO:0000313\|EMBL:AET02855.1}

Sequence

Transcript Sequence

>Glyur001208s00036579.1
ATGGAGGGTGAGATGAAGAAGTACATCACATGTGAGGAACTGAAGAAACACAACAAGCAAGGTGATTTGTGGATTTCGATTCAAGGTAAGGTTTACAATGTCTCAGATTGGGCAAAGGAACACCCAGGTGGGGATGTTCCAATTCTGAACCTTGCAGGCCAAGATGTAACCGATGCGTTCATAGCATACCATCCAGGAACAGCATGGCAATACCTTGACAAATTCTTCACAGGTTACCACGTCGAGGATTTCAAGGTTTCTGAGGTTTCCAAGGATTACAGGAAGCTCATGACCGAGTTTAAGAAACTGGGTCTGTTCGAGAAGAAGGAACATGTCNCGCTTTACACACTTACATCTGTTGCTGTTATGTTTGCCATTGTTCTCTATGGTGTTCTCAGATGCACCAGTGTTTGGGCGCATCTGGGTTCAGCCATGTTGTTGGGTCTTCTCTGGATGCAAAGTACCTATGTGGGTCATGATTCGGGTCACTATGAGGTTATGTCTAGTCGTGGATACAACAAATTGGCACAGATCACGTGTGGGAATTGCTTAACTGGGATAAGCATTGCTTGGTGGAAATGGACTCATAATGCTCACCACATAGCTTGTAATAGCCTTGATTATGACCCAGATTTGCAGCATATCCCAGTTTTTGCTGTTTCCTCTAAATTCTTTTCCTCCATGGACTCTTGTTTCTATGGGAGGAAGCTAAAGTTTGATGCTTTGTCAAGGTTTTTGGTTAGTTACCAGCACTTGACTTTTTACCCGGTTCTGTGCTTTGCAAGGTTGAACCTTTACCTTCAGACACTCTTGTTGTTGTTCTCAACCAGGAAGGTACCTGATAGGGTTGCTAACATATTGGGGGTGCTTGTGTTTTGGACTTGGTTCCCTCTGTTGCTGTCTTGTTTGCCAAATTGGTCAGAGAGGCTAATGTTTGTGCTTGCTTGCTTTGTGGTTTGTTCCATCCAGCACCTTCAGTTCTGTCTGAACCATTTTGCTGCTAATGTTTATGTTGGTCCACCCAATGGGAATGACTGGTTCGAGAAGCAGACGAGTGGGACATTGGACATCTCTTGCTCTACTTGGATGGATTGGTTCTTTGGTGGGTTGCAGTTTCAGCTTGAGCACCATTTGTTCCCTAGGCTTCCAAGGGCACAGTTGAGGAAGGTTTCACCATTGGTGATTGATTTGTGCAAGAAGCATAACTTGCCTTATAGGAGCTTGTCTTTTGTGGAGGCTAATCTTTGGACTCTTAAGACCCTTCGGACTGCTGCTTTGCAGGCTAGGGATTTGACTAACCCTTCTCCTCAGAATTTGCTCTGGGAAGCTTTTCATACTCATGGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01208	49299	50645	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001208s00036579.1	PF00173.23	Cyt-b5	8	79	9.90E-25
Glyur001208s00036579.1	PF00487.19	FA_desaturase	136	408	3.60E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.719
SRR1783600	control	10.853
SRR1783602	moderate drought stress	6.842
SRR1811619	moderate drought stress	6.830

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	102.837
DRR006520	Root Summer glycyrrhizin high producing strain	101.813
DRR006521	Root Winter glycyrrhizin high producing strain	113.203
DRR006522	Root Winter glycyrrhizin high producing strain	108.735
DRR006523	Root Summer glycyrrhizin low producing strain	154.621
DRR006524	Root Summer glycyrrhizin low producing strain	132.323
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.392
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.352

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.903
SRR2868004	Drought Stress (root)	61.579
SRR2967015	Control (root)	98.895

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	180.830
SRR9715740	Leaf	186.796
SRR9715741	Leaf	209.826
SRR9715739	Root	182.028
SRR9715742	Root	319.156
SRR9715743	Root	299.297

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	105.571
SRR8749028	MeJA induced 9h	98.347
SRR8749029	MeJA induced 9h	89.355
SRR8749030	Uninduced	53.288
SRR8749031	Uninduced	24.219
SRR8749032	Uninduced	29.427

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.209
SRR8400027	Control - Root	33.444