Gene detail

Gene detail information of Glyur001208s00036577

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G26830.1	cullin 3
NR	XP_004511215.1	PREDICTED: cullin-3A-like [Cicer arietinum]
Swissprot	tr\|Q9ZVH4\|CUL3A_ARATH	Cullin-3A
trEMBL	tr\|V7C8A0\|V7C8A0_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW25593.1}

Sequence

Transcript Sequence

>Glyur001208s00036577.1
GCGGAACCTCAAAACGAAACGTTCCGTTTAGCCCTTGAAAACCAAATCTTCAAAGAAAAACAGTGTCTGTNTCGTCCTCATCATCTTCTCTTTCAAAAAGCAAAAAAAATAAAATAAAATAAAATAACATTACTCTCACCATTAATCCGAACCAATTTATTGGCTCTAAATCCTAATCACTCCAATTCCTCCCAATGATTTGTCAACGTGCAAATTTTCTGTGTGAAAAAAAATAAAATAAAAAAAATAAAATAAAATAAAATAAAAGTAAAATTTGATTTTTCATGTAAATCTCTGCTGCAACCTCATCGATCTTGCGCTTTTCCTTAACCTGAGGCTTTTTTAGATTCTGGGTTCAAACAAAGTCGCGATTTTNGGTAGTGGGTATTGGGATTTGGATTAGAAAGGGGGCAAAATGAGTAATCAGAAGAAGAAGAATTTTCAGATAGAGGCGTTTAAGCACCGTGTGGTGATGGATCCGAAATATGCCGACAAGACATGGAAGATTCTGGAAGATGCAATTCACGAGATTTACAACCACAACGCTAGTGGTCTCAGTTTTGAAGAGCTTTACAGAAATGCATACAATATGGTGCTTCACAAATTTGGTGAGAGGCTGTACTCAGGACTGGTTGCAACCATGACTGCGCATCTCAAAGATATAGCTCAATCGGTTGAAGCCGCACAAGGAGGTTCTTTTCTTGAAGAACTGAACAGGAAATGGAATGATCATAATAAGGCATTACAAATGATTAGAGATATATTGATGTACATGGATAGGACTTACATTCCAAGCACCCAGAAGACTCCTGTTCATGAACTTGGGCTTAACCTGTGGAGAGAAAATGTTATTTATTCCAGCCAGATCAGGACTCGGCTACTAAATACGCTTCTGGAATTAGTACATAGTGAACGCACTGGTGAAGTTATTGATAGAGGGATAATGAGAAATATAACAAAAATGCTAATGGATTTAGGTCCTTCTGTTTATGGGCAAGAATTTGAGGCTCATTTTCTTCAAGTTTCAGCTGAGTTTTACAGTGTGGAATCCCAGAAATTCATCGAGTGTTGTGATTGCGGTGATTATCTTAAGAAAGCTGAGAGGCGTCTGAATGAGGAAATGGATCGAGTGAGCCATTACTTGGACCCCAGGACTGAAAAGAAGATTAATAATGTTGTAGAGAAGGAGATGATTGAAAATCACATGCTTAGATTAATCCATATGGAGAATTCTGGCTTAGTACACATGCTGTGTGATGATAAGTATGAAGATTTGGGTAGGATGTATAACTTGTTCCGTCGTGTTACCGATGGTCTCTCGAAAATACGAGAAGTGATGACTTCACACATAAGAGAGTCTGGTAAACAGCTTGTTACTGATCCTGAAAGGTTGAAGGATCCGGTTGAATTTGTGCAGAGGCTCTTAGATGAGAAAGATAAATATGACAAGATCATAAACTTGGCATTCAACAATGACAAGTCTTTCCAGAATGCCTTGAATTCCTCATTTGAATATTTCATTAACCTGAATCCCCGCTCCCCCGAGTTCATTTCACTATTTGTAGATGATAAACTCCGTAAGGGTCTGAAAGGGGTCAATGAGGATGATGTAGAGGTTACTCTNGACAAGGTGATGATGCTATTCCGATACTTGCAAGAAAAAGATGTTTTTGAGAAGTATTATAAACAGCATCTGGCAAAGCGTCTTTTGTCTGGAAAAACGGTTTCCGATGATGCNGAGAGGAGTCTCATTGTTAAGCTTAAGACTGAATGTGGCTATCAGTTTACATCTAAATTAGAGGGAATGTTTACAGACATGAAAACCTCTCAGGACACAATGCAGGGCTTTTATGCTGGCCACCCTGAACTTGGCGACGGTCCAACACTTACTGTCCAGGTTCTGACAACAGGGTCTTGGCCAACTCAGTCTAGTGTTACATGCAACCTGCCAGCTGAAATATCCGCACTTTGCGAGAAGTTTCGGTCGTATTACCTCGGCACCCATACTGGCAGGAGATTGTCCTGGCAAACCAACATGGGCACAGCAGACTTAAAAGCATCCTTTGGGAAGGGTCAGAAGCATGAGTTGAATGTCTCTACTTACCAAATGTGTGTCCTCATGCTGTTCAACAATGCTGACAAACTTAGCTACAAGGAGATCGAGCAAGCAACCGAGATTCCCACTGCAGATCTTAAGAGGTGTCTGCAATCCTTGGCTTTAGTCAAGGGAAGAAATGTCCTCAGAAAGGAGCCAATGAGTAAAGATGTTGGTGAGGATGATGCTTTCTTTGTGAATGACAAGTTCAGCAGTAAACTATACAAGGTGAAAATAGGAACTGTAGTTGCACAAAAGGAAACTGAACCTGAGAAACAGGAAACCCGGCAGAGGGTGGAGGAGGACAGGAAGCCCCAGATTGAAGCAGCAATAGTGAGGATCATGAAATCTAGGAAGCAACTTGATCACAACAATCTCATAGCTGAGGTCACGAAGCAGCTGCAGTCGCGTTTCCTGGCGAATCCGACTGAGGTCAAGAAACGGATCGAGTCTCTCATCGAGCGGGACTTTTTGGAGAGAGATGATAATGACAGAAAGTTGTATCGGTATCTTGCCTAGAAATTTGGTAAACTTGTTTTTGTTTTCAGTAATCACAGTGATACATGTATTGTATCATATGAACCGGGTTGAAAAAANTTACCTTTAAATAGCTCTCCATTGATTTCAATGTACATTGATTTGTTTCCCTATTCGTTGTGATGTTTCATCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01208	25194	29309	-

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex

molecular_function
GO:0031625 ubiquitin protein ligase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001208s00036577.1	PF00888.17	Cullin	29	631	2.30E-187
Glyur001208s00036577.1	PF10557.4	Cullin_Nedd8	659	725	1.10E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.183
SRR1783600	control	23.234
SRR1783602	moderate drought stress	16.576
SRR1811619	moderate drought stress	16.528

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.090
DRR006520	Root Summer glycyrrhizin high producing strain	35.726
DRR006521	Root Winter glycyrrhizin high producing strain	20.054
DRR006522	Root Winter glycyrrhizin high producing strain	19.398
DRR006523	Root Summer glycyrrhizin low producing strain	34.738
DRR006524	Root Summer glycyrrhizin low producing strain	34.781
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.153
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.145

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.985
SRR2868004	Drought Stress (root)	35.363
SRR2967015	Control (root)	32.629

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.844
SRR9715740	Leaf	19.937
SRR9715741	Leaf	28.194
SRR9715739	Root	2.433
SRR9715742	Root	13.745
SRR9715743	Root	12.914

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	69.247
SRR8749028	MeJA induced 9h	59.119
SRR8749029	MeJA induced 9h	83.129
SRR8749030	Uninduced	85.736
SRR8749031	Uninduced	140.382
SRR8749032	Uninduced	124.387

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.993
SRR8400027	Control - Root	23.289