Gene detail information of Glyur001208s00036575.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24090.1 | 7.00E-89 | chitinase A |
| NR | XP_007153597.1 | 5.49E-158 | hypothetical protein PHAVU_003G049100g [Phaseolus vulgaris] |
| COG | YP_002296649.1 | 6.00E-09 | chitinase class II protein [Rhodospirillum centenum SW] |
| Swissprot | tr|P29060|CHIA_TOBAC | 3.00E-111 | Acidic endochitinase (Precursor) |
| trEMBL | tr|V7C9K1|V7C9K1_PHAVU | 2.00E-158 | Uncharacterized protein {ECO:0000313|EMBL:ESW25591.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01208 | 22439 | 23862 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01183 | E3.2.1.14 | EC:3.2.1.14 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001208s00036575.1 | PF00704.23 | Glyco_hydro_18 | 7 | 200 | 2.40E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.144 |
| SRR1783600 | control | 0.119 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.029 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.022 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.121 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.355 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.092 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.367 |
| SRR8749031 | Uninduced | 0.331 |
| SRR8749032 | Uninduced | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |