Gene detail

Gene detail information of Glyur001207s00025868.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G50480.1	10-formyltetrahydrofolate synthetase
NR	XP_003556553.1	PREDICTED: formate--tetrahydrofolate ligase-like [Glycine max]
COG	YP_005442361.1	formate--tetrahydrofolate ligase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprot	tr\|P28723\|FTHS_SPIOL	Formate--tetrahydrofolate ligase
trEMBL	tr\|I1NJ85\|I1NJ85_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G38740.1}

Sequence

Transcript Sequence

>Glyur001207s00025868.1
GTGCGTGCAGGAATTTATGTGTTCCCGTGCCCAGATAGATGAGTGAGAACAATAAAAAACAAGAAAGAGTGAATGAAATGAATGACGACAAGAAACAAAAAATAGAGAGAGAGAGAGAGAGGGATAAGATTGAGAGATTCAACGAACAATACACAGCAAACAAACTCGAATCAAATCAACCTGCTCAAATTTTCTTTTTCATTTTCCCCTTTCCGTCCTCGCTCCTCGTCAATCAAACAACCACTGTTTTTTGTGCCAAACTGAATAGCCTTTTAATATTTTAATCCAAAAAAAAAGAGAAAGAAAGAATGAGTTCGTCAAGGACAGTGAGGAAGCTACAACAGGTGGTGTCACCTGTTCCAGCTGACATAGACATTGCTAACTCGGTCGAACCGGTTCACATCTCCGATATTGCCAAGGATCTCAATCTCACTCCCAATCACTATGACCTTTACGGAAAATATAAGGCCAAGGTTTTGTTGTCTGTTCTCGATGAACTGCAAGGATCGGAAGATGGGTATTATGTTGTGGTTGGAGGCATTACTCCAACTCCTCTTGGAGAAGGCAAATCTACTACTGTTGTGGGGCTCTGTCAAGCTTTGGGTGCTTTTCTTGATAAAAAGGTGGTCACCTGCCTTCGCCAACCATCACAAGGACCTACTTTTGGAATCAAAGGAGGTGCAGCTGGTGGTGGTTATAGCCAAGTGATTCCCATGGATGAATTCAATCTTCACCTAACAGGAGATATCCATGCAATAACTGCAGCAAACAATCTTCTAGCTGCTGCAATTGATACCCGAATTTTCCATGAGTCAACGCAGTCTGATAAGGCTCTTTTCAACCGGTTATGCCCTCCAAATAAAGAAGGAAAAANGAGCTTTAGTGATGTCATGTTTAGGCGTCTCAAGAAGCTTGGCATTTCAAAGACCAATCCAGACGATCTTACGCAAGAAGAAGTAAATAAATTTGCTAGGCTTGATATTGACCCAGATTCTATTACATGGAGGAGAGTAATGGACATCAATGACAGGTTCTTAAGAAAAATTACTATAGGCCAGGGNCCTGATGAGAAAGGAATGGTAAGAGAAACAGCATTTGATATTTCAGTTGCTAGTGAGATAATGGCTGTTTTGGCATTGACAACATCCTTAGCTGATATGCGAGAGAGGCTAGGGAAAATGGTTATTGGAAATAGCAAGAGTGGTGANCCTGTAACTGCTGATGATCTAGGTGTTGGAGGTGCTTTAACGGTTTTAATGAAGGATGCCATTCACCCTACTCTTATGCAGACACTGGAAGGAACCCCTGTTCTTGTTCATGCAGGTCCATTTGCAAATATTGCTCATGGGAATTCTTCTATTGTGGCTGATAAGATTGCGCTAAAGTTGGTGGGACCGGNTGGATTTGTAGTTACTGAAGCTGGTTTTGGTGCTGATATTGGAACTGANAAGTTTATGAACATTAAGTGTCGATATAGTGGTTTGACACCTCAGTGTGCAATTATTGTGGCAACAATAAGGGCACTAAAAATGCATGGTGGAGGGCCAGCAGTTGTTGCTGGAAAACCTCTTGACCATGCATATTTGACTGAAAATGTTGCTCTGGTGGAGGCTGGTTGTGTGAATATGGCACGACATATATCAAATACAAAAGCTTATGGTGTGAATGTGGTAGTTGCTATCAACAAGTTTTCAACTGACACNGAAGCTGAGCTAAATGCGGTTAGAAATGCTGCCTTAGCTGCTGGTGCTTATGATGCTGTAGTATGTACCCATCACGCCCATGGTGGCAGAGGAGCAGTGGACCTGGGTATTGCAGTTCAAAAAGCTTGTGAGAATGTGAAACTACAATTGAAGTTTCTATATCCACTGGATCTGAGTATTAAAGGAAAAATAGAGGAAATTGCAAAGTCCTATGGAGCCAGCGGCGTGCAATACTCTGAGCAGGCCGAGAAGCAGATTGAAATGTATTCGAAACAAGGGTTTTCNGGACTTCCGATTTGTATGGCCAAAACCCAGTATTCATTCTCAGACAATGCTGCGGCTAAGGGAGCTCCAACCGGGTTTATCTTACCAATAAGGGATGTAAGAGCTAGTATAGGAGCTGGGTTTATTTATCCTTTAGTTGGAACAATGAGTACAATGCCAGGGCTTCCAACAAGACCATGCTTCTATGACATTGATCTTGATACAACAACCGGAAAAGTNATTGGTCTCTCTTAAACCTCAAGTGGCTAGCTCTTGAGGTTTATTCCACTTTCAAAAGCTAAATGGGTGCTATTATTACCTATCCCTTTACCAAGTTAATGAATGCCACAGTAACGTATTCCTCTCCTTGCTGTTCTCCTGTTTCTTTGTTTGGTGATCTGTAAGAATGAAATAAGTATTTGAGGAGATATCGTGTATTTTTGTTTTTCATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01207	61376	65994	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01938	fhs	EC:6.3.4.3	Carbon metabolism	map01200
			Carbon fixation pathways in prokaryotes	map00720
			One carbon pool by folate	map00670

Gene Ontology

biological_process
GO:0009396 folic acid-containing compound biosynthetic process

molecular_function

GO:0004329 formate-tetrahydrofolate ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001207s00025868.1	PF01268.14	FTHFS	18	637	1.60E-250

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.474
SRR1783600	control	42.005
SRR1783602	moderate drought stress	36.222
SRR1811619	moderate drought stress	36.257

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.886
DRR006520	Root Summer glycyrrhizin high producing strain	32.468
DRR006521	Root Winter glycyrrhizin high producing strain	37.814
DRR006522	Root Winter glycyrrhizin high producing strain	36.883
DRR006523	Root Summer glycyrrhizin low producing strain	19.586
DRR006524	Root Summer glycyrrhizin low producing strain	19.724
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.811
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.495

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.800
SRR2868004	Drought Stress (root)	56.671
SRR2967015	Control (root)	52.107

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.603
SRR9715740	Leaf	46.673
SRR9715741	Leaf	44.272
SRR9715739	Root	42.766
SRR9715742	Root	67.194
SRR9715743	Root	65.741

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.096
SRR8749028	MeJA induced 9h	33.883
SRR8749029	MeJA induced 9h	16.157
SRR8749030	Uninduced	16.900
SRR8749031	Uninduced	11.233
SRR8749032	Uninduced	10.749

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	82.764
SRR8400027	Control - Root	84.243