Gene detail information of Glyur001207s00025865.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G44520.12.00E-132cytochrome c oxidase 10
NRXP_003592792.10Protoheme IX farnesyltransferase [Medicago truncatula]
COGYP_004055770.11.00E-58protoheme ix farnesyltransferase [Marivirga tractuosa DSM 4126]
Swissprottr|O64886|COX10_ARATH4.00E-174Protoheme IX farnesyltransferase, mitochondrial (Precursor)
trEMBLtr|G7IF26|G7IF26_MEDTR0Protoheme IX farnesyltransferase {ECO:0000313|EMBL:AES63043.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold012074560551186-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K02257COX10EC:2.5.1.-Oxidative phosphorylationmap00190
Oxidative phosphorylationmap00190
Porphyrin and chlorophyll metabolismmap00860
Porphyrin and chlorophyll metabolismmap00860


Gene Ontology

biological_process

GO:0048034  heme O biosynthetic process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0004659  prenyltransferase activity

GO:0008495  protoheme IX farnesyltransferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001207s00025865.2PF01040.13UbiA842211.30E-20
Glyur001207s00025865.2PF01040.13UbiA2234701.40E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.765
SRR1783600control15.627
SRR1783602moderate drought stress16.254
SRR1811619moderate drought stress15.369

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.156
DRR006520Root Summer glycyrrhizin high producing strain13.740
DRR006521Root Winter glycyrrhizin high producing strain15.952
DRR006522Root Winter glycyrrhizin high producing strain15.665
DRR006523Root Summer glycyrrhizin low producing strain21.840
DRR006524Root Summer glycyrrhizin low producing strain22.308
DRR006525Leaf Summer glycyrrhizin high producing strain9.497
DRR006526Leaf Summer glycyrrhizin high producing strain9.391

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)26.964
SRR2868004Drought Stress (root)25.243
SRR2967015Control (root)25.063

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf21.240
SRR9715740Leaf19.199
SRR9715741Leaf29.182
SRR9715739Root18.995
SRR9715742Root19.428
SRR9715743Root17.162

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.404
SRR8749028MeJA induced 9h21.977
SRR8749029MeJA induced 9h16.620
SRR8749030Uninduced23.353
SRR8749031Uninduced14.830
SRR8749032Uninduced18.185

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root25.006
SRR8400027Control - Root24.920

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved