Gene detail

Gene detail information of Glyur001207s00025863

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08790.1	2.00E-100	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
NR	XP_004497355.1	1.26E-168	PREDICTED: nitrilase homolog 1-like [Cicer arietinum]
COG	YP_003268249.1	1.00E-67	nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q94JV5\|NILP2_ARATH	2.00E-125	Nitrilase-like protein 2
trEMBL	tr\|I3SDK7\|I3SDK7_LOTJA	2.00E-167	Uncharacterized protein {ECO:0000313\|EMBL:AFK38349.1}

Sequence

Transcript Sequence

>Glyur001207s00025863.1
TGCGAGCGAACTACTTACATTACATGGAAAGATTTGTCTGAAACGAACAAATCCAATCCGAATGAAGTGTTTAGTATGATGATGTTGTAACATGTAACATGCGGTTATCGTTGTCAGTGAATCCGATTGGCGGAATCAACNCCTCTTACACTCCTTCCATTCCCATATCGCTACGATTACTCCAACTCCAACGTCATCGATTGCGAGCCTCTCTCTCCGGCGCCGGCGAGTCAATCATGGCCGCCACCACCACTAACTCAGTCCGAGTTGCCGCGGCTCAAATGACTTCCATCACCGACCTCGCTTCCAATTTCACCACCTGCTCTCGCCTTGTCAGACAGCATCGGCTGGAGCGAAATTGCTATGCTTTCCTGAAGCCTTCTCTTTTAGAGTCCAGCATTTGGTTGTCACTTGGAGGCTTCCAAGAAAAAGGATCTGACCCTCAACACTTGTTTAATACCCACGTTGTAGTAGACGACACTGGGAAAATTCGGAGCACTTACAGAAAAATACATCTGTTTGATGTAGATGTTCCTGGTGGAAGGGTATATAAAGAAAGTAGTTTTACAGAAGCAGGCAAGGATATTGTTGCAGTAGACAGTCCTATTGGGCGTTTGGGCCTTAGTGTTTGCTATGATTTGAGATTTCCCGAGCTTTACCAGTTGTTACGTTTCCAACATGGAGCGCAGGTNCTATTGGTGCCTGCAGCATTCACTAAAGTGACTGGTGAAGCACATTGGGAGATTCTTCTTCGTGCTCGTGCAATTGAGAATCAATGCTATGTCATAGCTGCTGCACAAGCCGGCAAACATAATGATAAAAGAGAAAGCTATGGTGACACATTAATTATCGATCCATGGGGGACCGTTGTTAGTCGATTACCAGATCGTTTGTCTACAGGCATTGCAGTAGCTGATATTGATTTATCATTGGTTGATTCAGTAAGAGAGAAGATGCCTATTGCTCAGCAAAGGAAGCCAATTGACTTCTGGAAAGCTGCATCTCTATAGTACTTATTCAAACCAACAGTCACAAAGGGGTGGTCTATTTAAATATGGGACTTGTATCATATGTACCAAAATAAAAGTATGGGANTTCCATACTAGATTACCCTGAGGAGGATGGTGCCTACAATTATGAATTTCGGTCCATGCTTGCTAAGGATTAAGATTATTACAATTCGTGGTAGTAACAAGTACTGTCTTTTTTTTTTTTTTTTGGATTTGAGTAACAAGTACTGTCTTTTATCTTCAAGTCATTTGTGCATGCTCCATGGTATGGGTGTTACAAGTATTACGGCAGGGTCAAGTGTTATTTTTAATGAATTGTGGTTAGTGTGATTGTATCCAACTTNCTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01207	28739	33168	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006807 nitrogen compound metabolic process

molecular_function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001207s00025863.1	PF00795.17	CN_hydrolase	41	204	3.90E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.307
SRR1783600	control	7.148
SRR1783602	moderate drought stress	4.246
SRR1811619	moderate drought stress	4.044

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.704
DRR006520	Root Summer glycyrrhizin high producing strain	14.901
DRR006521	Root Winter glycyrrhizin high producing strain	8.407
DRR006522	Root Winter glycyrrhizin high producing strain	7.540
DRR006523	Root Summer glycyrrhizin low producing strain	12.406
DRR006524	Root Summer glycyrrhizin low producing strain	12.458
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.700
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.171

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.377
SRR2868004	Drought Stress (root)	18.969
SRR2967015	Control (root)	20.537

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.655
SRR9715740	Leaf	30.020
SRR9715741	Leaf	22.284
SRR9715739	Root	8.387
SRR9715742	Root	5.391
SRR9715743	Root	5.942

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.636
SRR8749028	MeJA induced 9h	5.312
SRR8749029	MeJA induced 9h	5.859
SRR8749030	Uninduced	9.204
SRR8749031	Uninduced	6.676
SRR8749032	Uninduced	4.771

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.069
SRR8400027	Control - Root	14.103