Gene detail information of Glyur001204s00024992.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41490.1 | 1.00E-160 | UDP-glcnac-adolichol phosphate glcnac-1-p-transferase |
| NR | AFK37996.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_001435364.1 | 5.00E-21 | glycosyl transferase family protein [Ignicoccus hospitalis KIN4/I] |
| trEMBL | tr|I3SCK4|I3SCK4_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK37996.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01204 | 49835 | 53362 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01001 | ALG7 | EC:2.7.8.15 | N-Glycan biosynthesis | map00510 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001204s00024992.1 | PF00953.16 | Glycos_transf_4 | 166 | 337 | 1.40E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.607 |
| SRR1783600 | control | 19.957 |
| SRR1783602 | moderate drought stress | 13.554 |
| SRR1811619 | moderate drought stress | 13.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.940 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.269 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.332 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.099 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.762 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.511 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.860 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.732 |
| SRR2868004 | Drought Stress (root) | 15.971 |
| SRR2967015 | Control (root) | 18.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.724 |
| SRR9715740 | Leaf | 10.585 |
| SRR9715741 | Leaf | 13.485 |
| SRR9715739 | Root | 5.739 |
| SRR9715742 | Root | 8.996 |
| SRR9715743 | Root | 8.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.346 |
| SRR8749028 | MeJA induced 9h | 6.332 |
| SRR8749029 | MeJA induced 9h | 6.020 |
| SRR8749030 | Uninduced | 8.587 |
| SRR8749031 | Uninduced | 7.339 |
| SRR8749032 | Uninduced | 5.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.029 |
| SRR8400027 | Control - Root | 20.891 |