Gene detail

Gene detail information of Glyur001204s00024991.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41460.1	1.00E-160	apurinic endonuclease-redox protein
NR	KHM99272.1	0	Apurinic endonuclease-redox protein [Glycine soja]
COG	YP_007770464.1	5.00E-80	exodeoxyribonuclease III [Coprococcus catus GD/7]
Swissprot	tr\|P45951\|ARP_ARATH	0	Apurinic endonuclease-redox protein
trEMBL	tr\|K7K9G6\|K7K9G6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G34700.2}

Sequence

Transcript Sequence

>Glyur001204s00024991.1
CTGTCTCCACTCTCCACCCTTGCCTCAGCCTNTGTTGGCGGTTCTTTCTCTGTTCGGTGTTTACCTGACATGAAACAACTCCTGCAATTCGTGTCTACAACCTCTATCAATCTTACCAGTTTTGCAGTGGTTCAGAAGCATTTGAATACTAAGAAGACATTGGTTTGTCCAAGTGTGAAAGCAATGGGGTCTAAAAGAAGACCCTTTTCAAATTCATCAGAACCCTTGTCACCATTTGTTGAGGTTAAGAAGGATATGAAGCTCAAAGGGTTGGAAGCAAGCCCAATTGAGAGATTAAGAAATGACCCGGCCATAGTAGACACCATGACTGTTCAGGAACTCCGGAAGACATTGAAGAGTATTAGGGTCCCTGCCAAAGGCCGTAAAGATGAGCTTTTGTCTGCCTTGAAGAGTTTCATGGACAATAATAACATGTGTGCAGAACAAGATACTCAAATTAGAGAGGAACAAGGACTGCTCATTTCTTCTGAAAATACATCCTTAGAAATGAAGGCTGAAAAGGTATCGGATGAAGACCCTGTTGATTATGTCAATGATACTCCAGAGATATTTGAACTTAACCAGGGTAAGAGAAGATTAAAACGATCAGGATCTGAGAGTGAAACTGTCAAAGTGACAACCAAAAAGAAGCTGTCAGTGAAATCAGACGAGGGTACAGATGCTAAGCCTTCCAGGGCAAAGAGAAAAGTATCTTCAGAGGTTGTTAGTGTTGTAGCGCAATCAGATGAAATCAGTACCACCGCTATTCAAACTGAACCATGGACTGTTTTTGCCCACAAGAAGCCTCAAAAAGGTTGGATTGCATATAATCCTAGAACTATGAGACCCCNACCTCTTACTCGGGATACAAAATCTGTCAAGCTTTTGTCTTGGAATGTCAATGGATTGAGAGCATTGCTAAAATTAGAGGGATTCTCAGCTCTTCAACTTGCTCAAAGGGAAGACTTTGATGTATTGTGCTTGCAAGAGACNAAACTGCAGGAGAAGGATATCGAGGAAATAAAGCAGCGTCTGATAGATGGCTATGAGAACAGTTTTTGGACATGTAGTGTTTCTAAGCTTGGTTATTCCGGAACAGCAATAATCTCAAGGATAAAGCCACTTTCAGTTAGATATGGCCTAGGTATATCTGATCATGATAGTGAGGGTAGACTTGTGACCGTGGAGTTTGATACATTCTATTTGATAAGTGGATATGTCCCTAATTCTGGAGATGGCTTGAGAAGGCTGTCTTACAGAGTGACTGAATGGGACCCATCTCTCAGCAATTATTTGAAAGAGCTGGAAAAATCAAAACCTGTAGTTTTGACTGGTGATCTAAATTGTGCTCATGAAGAGATAGACATATACAACCCTGCTGGTAACAAAAGAAGTGCCGGGTTTACAGATGAAGAGAGGAAATCATTTGCAACAAATTTCTTATCAAGGGGATTTGTAGATACTTTTAGAAAGCAGCACCCTGGTGTTGTTGGATATACTTATTGGGGTTATCGGCACGGATGGCGTCTTGATTATTTCCTTGTCTCAGAATCCATAGCTGACAAAGTTCATGATTCATACATTCTCCCTGATGTTGCTGGTAGTGATCATTGTCCCATCGGCCTCGTTATCAAGCTTTAGTTCTGCAATTGAAGCACTGACTCTGAGCTTGTAGGCTTGAAATTGTGATTTATATGCAAGCAGGGATTTTTTTTGCTTTTTTGTCTTGTTTGCTTTCATTTTGGAAAACTATGCTATCCTTGTACATAGTACTATCCATGATCNTTGTCCTAAAGAGACCATGCAGAAATTTAAACCTCTTAACAAAAATTGAGAAGAGACAATGATATAGGAGGGTTAAATTTGGGAGTGTAACAAAAAAGAATGTCATTTTCAAATTTAGGGAATATCAGAAAACATAGGAGCCAGTGACATACATTTTTGTTACTGCCTGGACTTGAAGAGCTTTATCACCAACCCACCAATCTATACCCCTTTTTATTTTTTATAATGGCAAAAAAGAATGAATTTAGAGGAGGAAATATAAATATTTGCATGGCCAATAGGATCTTTAATCATCAAAACAAAAAACTAGCCATTATAGGTCAGTAAGAGCATCTCCAATAGGGTTGAACTTCTCTAAGGATCTGGAGTTGTTCTTACTGTTTGTGACCATCTAAATAATATTCTCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01204	42705	47865	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01142	E3.1.11.2, xthA	EC:3.1.11.2	Base excision repair	map03410

Gene Ontology

biological_process
GO:0006281 DNA repair

cellular_component
GO:0005622 intracellular

molecular_function

GO:0003677 DNA binding

GO:0004518 nuclease activity

GO:0004519 endonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001204s00024991.1	PF02037.22	SAP	107	139	3.30E-06
Glyur001204s00024991.1	PF03372.18	Exo_endo_phos	296	537	6.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.579
SRR1783600	control	3.492
SRR1783602	moderate drought stress	3.443
SRR1811619	moderate drought stress	3.476

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.209
DRR006520	Root Summer glycyrrhizin high producing strain	4.977
DRR006521	Root Winter glycyrrhizin high producing strain	9.749
DRR006522	Root Winter glycyrrhizin high producing strain	9.575
DRR006523	Root Summer glycyrrhizin low producing strain	4.027
DRR006524	Root Summer glycyrrhizin low producing strain	3.880
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.467
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.553

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.168
SRR2868004	Drought Stress (root)	7.260
SRR2967015	Control (root)	7.424

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.804
SRR9715740	Leaf	7.513
SRR9715741	Leaf	4.468
SRR9715739	Root	0.614
SRR9715742	Root	2.673
SRR9715743	Root	2.662

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.091
SRR8749028	MeJA induced 9h	5.615
SRR8749029	MeJA induced 9h	4.307
SRR8749030	Uninduced	3.753
SRR8749031	Uninduced	2.382
SRR8749032	Uninduced	2.069

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.295
SRR8400027	Control - Root	7.569