Gene detail

Gene detail information of Glyur001204s00024990

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10160.1	0	DHFS-FPGS homolog C
NR	XP_006574379.1	0	PREDICTED: uncharacterized protein LOC100527932 isoform X1 [Glycine max]
COG	YP_359198.1	6.00E-48	folylpolyglutamate synthase [Carboxydothermus hydrogenoformans Z-2901]
Swissprot	tr\|F4J2K2\|FPGS2_ARATH	0	Folylpolyglutamate synthase {ECO:0000250\|UniProtKB:Q05932, ECO:0000312\|EMBL:CAC81075.1}
trEMBL	tr\|I1JGE2\|I1JGE2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G34760.1}

Sequence

Transcript Sequence

>Glyur001204s00024990.1
ATGCGTGTGAACCTCATTCATTTTGCAAGAGAGTCGAGTTTAGCCGTTGCCGCTACTGTTAGTGTTCCCACCGAACCGATAGCATCGATGGTTGATATGCTGATGATAATAACCAATTTCAAGTTCAACATGTACCCGAAGTGTGAGATGATTGGAGTTTCACACTTAAATCGGAGGCATATCAATTCCACTACTAAAGCAAAATGGATTTCTACTCTATTGCCTGCATATACTNCAAGCATACATGATAATGTCATTGGACCTTCATACACTAACATACATAATGTCACTGCACGAAGATTTGTGTATAAGATGTCATCTGAAGCTCTCTCTGAAAGGGGAAGCAATGTTGTCACCTTGTCTTCATATGAAACTGCCATGGAAAAACTTTCATCTCTTATTACTCGGAAAAGGCGTGGGGAGAAGCCACCAGTTGCTAACAAATTAGAAAGGATGTCAATGTATCTTAAGATACTGGGTTTGGAAGAAGATATAAATAGGCTCAACATTATTCATGTGGCAGGCACAAAGGGAAAGGGTTCAACATGCATATTCTGTGAGGCAATCTTAAGGGAGTGTGGCTTTCGCACTGGAGTTTTCACATCCCCTCACTTAATTGACGTGCGTGAACGATTTCGTATCGATGGGATTGACATATCAGAAGATAAGTTTTTACAGTATTTCTGGGATTGTTGGAACAAATTGGAGGAAAAAGCAACAGAGCAGCTCCCAATGCCCCCATTGTTTCAGTTTCTTACTGTATTGGCCTTCAAAATATTTATATCTGAACAGGTTGATGCAGCCATTGTAGAAGTTGGTCTTGGAGGCACAGAAGACTCAACAAACGTGATTAAAAAACCTACTGTGTGCGGCATTACTTCTTTGGGGATGGATCATACTGAGATATTGGGAGATACTCTTGGACTGATAGCTTCACACAAGGCAGGGATTTTTAAGCCTAAAGTTCCTGCCTTCACAGTACCCCAGCCTCCTGAAGCAATGGATGTTATCCTTGAGAGGGCCAAAGAACTCATGGTTCCACTGGATGTTACCGAGCCTTTAGATTGTAAACAAATCAAGGGATTAAAGCTTCGTTTATCTGGTGATCACCAATTTTATAATGCTGCTCTTGCAGTCTCACTTTCTAGATGCTGGCTTCAGAGAACAGGAAACTGGGAAAAACTTTTTCAAAATGATTTTCAGGATTCTAATTTGCCAGATGAATTTATTAGAGGCCTTTCAGCTGCCCATTTTTCTGGGAGGGCTCAGATTGTTTATGACTCTTCTCTAAATTCGGACTGCTCAGAAATTGTGTCCGAAAATTGTGGTGGAGAGTTGATATTTTATTTGGATGGAGCTCATAGTCCAGAGAGCATCGAGGCTTGTGCAAAATGGTTCTCCAATGCCGTAAGTGGATATAATATTCCATCACATTCGTCTATTGGTGTAGAAAATGCAGAGGAATCATCAGAAAATGGTCACATCTTTCATGAAAGCAAGACCTTGGGGCAGTTTGAGAAATCTTATAGGCAGGTAGGTATTATTAAAATAATTGATTGTTCCAGCTGTTCCTGGGGCTTATCCACTGTTATTCTTCTATTCAATTGCTTAGATGTGAGAAATCCTCATATTTTGCTTCCACGGCTAGTGAATACATGTGCTTCTTCAGGTATTCATTTCTCAAGAGCACTTTTTGTCCCGAGCATGTCAAAGTATACTAAGGTTACTTCTGGTGCATCAGTTATTCATTCTGATCTTACTGGCATAGACCTATCATGGCAATTTAACCTCCAAAGAGTCTGGGAGAAGATTATGCATGGGAAAGAAATGACCACTTCGCTTGAAAAGGATTTCAAGATAGATAGCAAGATGATGTTACCTCCTCATGAATTTCTTTATGATAATGCTTCAAAGGGCTGCCCTTCCCATAACCATTTTGCAAGCAGTGCAGTAATGCCTTCGTTGCCATTGACAATAAAATGGTTGAGGGACTGTGTCAAAGAACACCCATCAACAAGACTTCAGGTTCTTGTCACTGGATCTCTGCATCTGGTTGGAGATGTACTAAAGCTCTTGAAAAGATGATTTAAGTTGAAGAATAAAAAATGGGTCTGCCTGAAGTGGCTTTGGAAACTTCTATTGCAGCAAAAAGTTGCGCCATTATTTCAATCATTTCAGCGGACACTGAGTTCATGTGATTTCTCAATGGCCTGCATAGAGTTCTTTCTTTTTAAATATGAGCTATTATATTTGCACACTACGTTCCACACCATTATTTAAATGTCGAGAAACGCGGGGAATAAAGTAAAAGGGCGAAATTGGTAAACGACCAGAAGAATCAAGGATTTAACAAAAATGGTAATGAAGGACTTGTGTTGTTAATCTTGAGAAAGTTAAATTTAATGAAGCACTTTCAAAATGAGTCTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01204	31673	41486	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01930	FPGS	EC:6.3.2.17	Folate biosynthesis	map00790
			Folate biosynthesis	map00790
			Folate biosynthesis	map00790
			Antifolate resistance	map01523
			Antifolate resistance	map01523
			Antifolate resistance	map01523

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009396 folic acid-containing compound biosynthetic process

molecular_function

GO:0004326 tetrahydrofolylpolyglutamate synthase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001204s00024990.1	PF08245.7	Mur_ligase_M	173	379	4.80E-05
Glyur001204s00024990.2	PF08245.7	Mur_ligase_M	141	347	4.20E-05
Glyur001204s00024990.3	PF08245.7	Mur_ligase_M	173	379	4.60E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.355
SRR1783600	control	3.508
SRR1783602	moderate drought stress	2.739
SRR1811619	moderate drought stress	2.797

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.047
DRR006520	Root Summer glycyrrhizin high producing strain	4.073
DRR006521	Root Winter glycyrrhizin high producing strain	4.103
DRR006522	Root Winter glycyrrhizin high producing strain	4.039
DRR006523	Root Summer glycyrrhizin low producing strain	4.353
DRR006524	Root Summer glycyrrhizin low producing strain	4.327
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.937
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.876

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.312
SRR2868004	Drought Stress (root)	7.726
SRR2967015	Control (root)	9.510

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.309
SRR9715740	Leaf	20.470
SRR9715741	Leaf	16.493
SRR9715739	Root	0.470
SRR9715742	Root	1.920
SRR9715743	Root	1.887

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.146
SRR8749028	MeJA induced 9h	7.249
SRR8749029	MeJA induced 9h	6.232
SRR8749030	Uninduced	3.337
SRR8749031	Uninduced	2.085
SRR8749032	Uninduced	2.474

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.080
SRR8400027	Control - Root	7.240