Gene detail

Gene detail information of Glyur001204s00024989

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57190.1	1.00E-119	peptide chain release factor, putative
NR	XP_006576304.1	0	PREDICTED: putative peptide chain release factor 1, mitochondrial-like isoform X2 [Glycine max]
COG	YP_007171196.1	2.00E-66	peptide chain release factor 2 [Dactylococcopsis salina PCC 8305]
Swissprot	tr\|F4J264\|PRFB3_ARATH	3.00E-146	Peptide chain release factor PrfB3, chloroplastic {ECO:0000303\|PubMed:21771930} (Precursor)
trEMBL	tr\|I1JK72\|I1JK72_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G01080.3}

Sequence

Transcript Sequence

>Glyur001204s00024989.1
AAAAAATTTCTAAAGATAAGGTCACCACCAAGTCTTCGAAATCCATACCATCGTGGCTGCAGTGTAGTCCATTTGTCTTGTTTTGAAGCGGATGGAGCAAATTCTCCTCTGAAGATAAGCTCAAAATGGCAGTCTTCTCTAGTGAGGAAGAAGAATCCACGTACTGGGTTGCTCCTGTGTTCTTCCAGAATTAGAGCTTGCCACTCCATGGCTAACAACAAGGATATCTACAAACAAGTGGGTTTATTTTCACTAAGAAGGAAGATTGAAGATGCAGTTCTTCGTGCTGAGATGTTTGCATCGACAGCCTTGGAAATGGAAGAAGCAATGTGGACTAAGCAGGAAGAAATAGTACGTGATTTTGATCTGTGGGATGATCCAGCTAAGTCCAATGACATTCTTGTCAAGTTGGCTAACAGTGCCAAAGCGGTTGCTTCTCTAAAGGACGTACGATACAAGGTAGAGGAAGCAAAGCTGATCAACCAGTTGGCTGAGATGAATGTTATTGATTATGGGCTCTATAAACAAGCATATGATGCATCTTTAGATGTAGGCAACATTCTGGATCAGTACGAGATGTCTAAGCTTCTTAAGGGGCCATTTGATATGGCGGGAGCGTGTTTGGTTATAAAAGCTGGATCTAGTGGCATCTATCCAAAGGTCTGGGCAGAACAGCTCCTAAGCATGTATCTTAGATGGGCCGAAAGACAAGGTTATGAAGGAAGGATCGTTGACAGCTGTCCATTCCAGAATGGAGGAATTATTTCAGCATCTGTAGAGTTTGAATTTGAGTGTGCTTATGGCTATCTGTCAGGGGAAAAGGGAGTTCACCACCTGATAAGGGGTTCTCCAAATGAATCTTCTCAGCTTGAGACTAGCTCAGCAACTGTAGATGTTATTCCCATGTTCTTTGAGAATGCTCGTGATCTAGAAATTGATTCTGAGGATTTGATTATCTCATCTCCCTTGATTCATGGAGAACAGAAAAGACAAACTGAGCATACAGTTTGCATTCAGCATCTACCTNCTGGAATAAGTGTCCAATCCTCTGGTGAGAGAAGCCACTTTGCAAATAAGATGAAAGCAATAAACAGATTGAAAGCTAAACTTCAAGTGATAGCAAGGGAACAAGGAGTTGCAAGTATAAATAGTATAAGGAAGGATGACATTGTAAATCTGTGGCAAGAAGAAACTAGGAGGTATGTCTCTCATCCATACAAGTTAGTTCATGATGTAAAGACTGGCATCGAGACGTCAGACCTAAATTCTGTTTTGGATGGGAATATTGGACCCCTTATTGCAGCTCATATTAATACCAGATAGTCATGTTATAAGGTCTGATCCTGCAATTATTTAGCATGATAGACCTAGTATTTTGCACTTTTTGGTCCTGAAGATTTTCAGGATTTACTTCAATTCTTTGGTTTTGTGAACAAAAAAGAAAGAAATTGAGTATCAAATCATTCAATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01204	22379	27899	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006415 translational termination

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003747 translation release factor activity

GO:0016149 translation release factor activity, codon specific

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001204s00024989.1	PF03462.13	PCRF	170	273	1.20E-16
Glyur001204s00024989.1	PF00472.15	RF-1	330	411	1.70E-10
Glyur001204s00024989.2	PF03462.13	PCRF	156	259	1.10E-16
Glyur001204s00024989.2	PF00472.15	RF-1	316	397	1.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.293
SRR1783600	control	1.280
SRR1783602	moderate drought stress	1.251
SRR1811619	moderate drought stress	1.382

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.953
DRR006520	Root Summer glycyrrhizin high producing strain	2.842
DRR006521	Root Winter glycyrrhizin high producing strain	3.510
DRR006522	Root Winter glycyrrhizin high producing strain	3.303
DRR006523	Root Summer glycyrrhizin low producing strain	3.099
DRR006524	Root Summer glycyrrhizin low producing strain	2.992
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.725
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.222

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.991
SRR2868004	Drought Stress (root)	5.396
SRR2967015	Control (root)	6.683

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.779
SRR9715740	Leaf	53.529
SRR9715741	Leaf	37.553
SRR9715739	Root	0.450
SRR9715742	Root	2.054
SRR9715743	Root	2.071

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.806
SRR8749028	MeJA induced 9h	5.416
SRR8749029	MeJA induced 9h	2.592
SRR8749030	Uninduced	1.635
SRR8749031	Uninduced	1.863
SRR8749032	Uninduced	1.639

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.147
SRR8400027	Control - Root	5.957