Gene detail

Gene detail information of Glyur001203s00034515.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60400.1	4.00E-148	Mitochondrial transcription termination factor family protein
NR	XP_004515380.1	0	PREDICTED: uncharacterized protein LOC101499154 [Cicer arietinum]
trEMBL	tr\|A0A072TKN3\|A0A072TKN3_MEDTR	0	Transcription termination factor family protein {ECO:0000313\|EMBL:KEH17771.1}

Sequence

Transcript Sequence

>Glyur001203s00034515.1
ATGATGTTGTTGACCCGCCATTTCTGTAGCAGCAGCAGCAGCAGCACCAGCAGCACCTTAAAGGTATCAAAAATCCCTTCGAGGTACAAGAAGGTTGCCGGGGCACAAGCCAAACAGGCCCTTACCGAATACCTTCACGCCACCAGGTGCGTCCCTTACGCCTACGCAGACCAGATTGCCAAAAACTCCCATCACTCCCTCTCCAATCTCATTTCCAAGTTGGGTTCTTTCTCACCTTCTAGTTTCCCAAGGGAACTCAACAGGTTCCTCAGGTACAACCCCATCAACGAATTCGAGTTCTTCTTTGAGAGCATTGGCATTCACCACACCCACCTCCAAGCCCTGTTGCCCCACAACAAGTTNTTCTTTTCTGAAGATGGGTCCCTTCTGGATGCTGCTTGTGCACTCTGTGAATTTGGGTTCCCCTGGGATAGGCTTGGTTTGCTGTATAGTGAGAGTGGTGGCTGTATGTTTGGGAGGAGTGCTTCTGAGTTGAAGGGTAGGCTTTGTGGGCTCAAAAGACATGGTTTTTGCAATGTTCAGGTTGTTGGGATATGTTTGNCTTTCCCTTCTGTCCTTGGTACTGTGGAGGGTGCTGCTTCTGAGATTGATNGGTTGCTTGATGATCTGAGGTTGGTGTTTTTGGATTTTGATTTGGCAGGGTTTGTTGAGGGTAATGTGGATGCTTGGCATGAGGTGTGTAGGAAAATAAAGGTGTTTTATGATTTGAATGGTGACAAGGGGAATAAAATAGGGGAGCTCATTGGAAGGAATAAACATGTCATTCTTGAGCATGGGGAAGGGGAGTTGATTCAAAAGGTGGAGTACTTTTGTAGATTTGGTGTCAAGGAGGAGGAAGTAGCTCGGTTGATTCTGCAAGGAGGGTCAGAATTGTTGAATCTAGATTTGGAGACGCCGGTGATTAATGTGTTGAAGCTGTTGAAACACTTTGGGATGAGCTCCAAAGGTCTTGAGGATGTCAGGAGGAACTATGCTCATGTGTTGGGAACAATAACAGTGGCTAATCTGCCCAATGTGATGAGGGCTTTGGGTTTACATGAGTGGTTCTTTGATAAAGTCAAGGATGGGAATCATCAGCTGTTGGTGAGTTATGTCACAAGCTATCCCAATGAAGACCATGATAAAGGCTATCAAGGTCGTTTGAAGACGATTCGTGTTTCGAGAACACCGACTCATAATATGAGTAAATTGAATTTCTTGCATGCCATAGGCTTTGGGGAAAATGCTCTGACCATGGATATCTTAACTCATATGCATGGAACTAGTAGTGAGTTGCAAAATAGATTTGATTGCTTTCTACATTTAGGGGTTGAATACTCAAAGCTATGTAAGATGATCACTCTTCAACCTAAGGTTCTAAGCCAAAATCCTGAAATTATAGAGCAAAAGATTAACTTCCTCTGTCAGGAAATGGGGAACTCCTTACAGCTTTTGGACACTTTTCCGGCGTTCTTATGTTTCGACTTGGAGAACCGCATTAAGCCTAGGTACAGATTCCATATGTGGGTTTTGGAAAAGGGTCTGACTACCAAGAACTATTCCATTTCGAGCATCATTGCAACCAGTGACAAGAATTTTGTAACTCGCACTTTTAAAATTCACCCAGCTGCTCCAAAACATTGGTTCGAGCAATTCTATCCCAGAAAANTGCTATCCTTGGTTAACACATACAGTGCAGGAGATATGGTATTGTTGAAAAGAGAAGACNGTTGGTCTCCTGAGTGTTATTCTGAAAGATCTGCAAATCAAGGNGCTCATTTGGAACCCGAAGCTCCTTCAAGCCATCAAGAGCTGAAAGGAAATGTTTTGGATGTCTCCATTNGTTTGTGTGCCTCATCACTAGCTCAGTTGAAAGAGAAGCTTGCATCTGTTTCAGCTGCATTTCTGTGTGACAAGGAATTGCTTCCTAGTTGTCAAACCACAAGAGCAGAAAACATCACTTGATATATTAAAATACAATGATGTAGCAGGCAACCTTGCCAATTTTTCTGATTGTTTGTTCTATTTTCATTTTTGTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01203	65245	69242	-

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001203s00034515.1	PF02536.9	mTERF	430	533	5.50E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.384
SRR1783600	control	3.653
SRR1783602	moderate drought stress	6.037
SRR1811619	moderate drought stress	6.011

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.797
DRR006520	Root Summer glycyrrhizin high producing strain	3.658
DRR006521	Root Winter glycyrrhizin high producing strain	1.798
DRR006522	Root Winter glycyrrhizin high producing strain	1.699
DRR006523	Root Summer glycyrrhizin low producing strain	3.157
DRR006524	Root Summer glycyrrhizin low producing strain	2.761
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.604
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.481

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.273
SRR2868004	Drought Stress (root)	5.968
SRR2967015	Control (root)	5.121

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.634
SRR9715740	Leaf	2.046
SRR9715741	Leaf	1.673
SRR9715739	Root	0.355
SRR9715742	Root	1.978
SRR9715743	Root	1.405

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.761
SRR8749028	MeJA induced 9h	2.099
SRR8749029	MeJA induced 9h	0.731
SRR8749030	Uninduced	0.455
SRR8749031	Uninduced	0.319
SRR8749032	Uninduced	0.559

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.053
SRR8400027	Control - Root	9.479