Gene detail information of Glyur001203s00034514 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05180.1 | 5.00E-63 | photosystem II subunit Q-2 |
| NR | AFK41829.1 | 4.16E-100 | unknown [Lotus japonicus] |
| Swissprot | tr|Q41932|PSBQ2_ARATH | 4.00E-86 | Oxygen-evolving enhancer protein 3-2, chloroplastic (Precursor) |
| trEMBL | tr|I3SNI7|I3SNI7_LOTJA | 2.00E-100 | Uncharacterized protein {ECO:0000313|EMBL:AFK41829.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01203 | 61366 | 63309 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001203s00034514.1 | PF05757.6 | PsbQ | 37 | 170 | 1.10E-49 |
| Glyur001203s00034514.1 | PF05757.6 | PsbQ | 168 | 200 | 3.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.639 |
| SRR1783600 | control | 0.671 |
| SRR1783602 | moderate drought stress | 2.328 |
| SRR1811619 | moderate drought stress | 2.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.940 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.237 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.653 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.615 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.278 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.456 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2277.412 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2272.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.027 |
| SRR2868004 | Drought Stress (root) | 117.022 |
| SRR2967015 | Control (root) | 78.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1776.377 |
| SRR9715740 | Leaf | 1446.446 |
| SRR9715741 | Leaf | 1584.862 |
| SRR9715739 | Root | 3.661 |
| SRR9715742 | Root | 17.304 |
| SRR9715743 | Root | 14.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.192 |
| SRR8749028 | MeJA induced 9h | 25.543 |
| SRR8749029 | MeJA induced 9h | 12.187 |
| SRR8749030 | Uninduced | 11.927 |
| SRR8749031 | Uninduced | 0.586 |
| SRR8749032 | Uninduced | 18.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.410 |
| SRR8400027 | Control - Root | 37.714 |