Gene detail

Gene detail information of Glyur001203s00034513

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25370.1	2.00E-09	Protein of unknown function (DUF1639)
NR	XP_004510121.1	2.02E-26	PREDICTED: histone-lysine N-methyltransferase EHMT2-like [Cicer arietinum]
trEMBL	tr\|A0A061E2C0\|A0A061E2C0_THECC	5.00E-22	Uncharacterized protein {ECO:0000313\|EMBL:EOX96433.1}

Sequence

Transcript Sequence

>Glyur001203s00034513.1
CGTTAATTCTCATAACACACCTTCCAGTTTTGCTTCCCTTTCTCTTTTCTCTCCATTCTCTGAACTGTGATTGAATTCCATTCTCTCTCTATGAATTCTTTATCTATGCTTCCTTCGAATCTCTTCCTCTTCCTTACTCTCATTCTTCTTCTGATTCTTCTGCTTCTGCTTCCATTTCCACCGTAGCCACCCTAACAATGGCGTTCCGTTCAGTTTCCGACGCCCAAACACCACCAACCTCCCCTCCGCGGTCTCCGCCGTCGCCNCAGCCACCAATGATGACTGCCGCCTCCTTCTACCTGAAGCCTGCGGCGGCGACGGTGATACCGTCGCTTTACCAATTCCCTTTCGCCGGCGGCTTCAGGTGGAACACGAGCCTCCCAACCTATACCCCCAGCTATTCCGGTTTCAACCCGTTTCTGCACCCAGGTTCGTTCTCCGCGGCGAACCCAAGCAGTAGCTCCTTTCTTCGCTTCGGTTCGTCTCCGAGCCTCGCGGAGAATCCAAGCAGCAGCTCCGTTCTTCGCTTCGGTTCATCTCCGAGCCTCGCGGAGAACCCAAGCAGCAGCACCGTTCTTCGCTTAGGTTCGTCTCCGAGCTTCGCGGAGAACTTAAGCAGCAGACCCGTTTTTCGCTTCGGTTCGTCTCCGAACCGGGAGGAGAACAAAAACAGCAGCTCTGTTNTGCTTCCCGGTTCGCCTCCGGACCGGGATGAGAACAGAGAGAACTNCTCCGGTTTGAACCGGACTGAAAACGACGCCGACAATGAGGGACCGGTCGAGCCGGAGAGTGAGAGTGAGGAAGGTGAGGAGTTGGAGGGAAAGGGAAAAGAGAAGCTCTGTGTTAAGTTGCCGGTGAAGGCCAAGGGTTCCGAGGAGAACAGTGACGACAGTGACGGTGAGGGAGACGGAGAAGCTGACGGTGACGGCGAGGGAGACGGAGAAGCTGACGGTGACGGTGATGATGAGGAGGAGGAGGAGGAGGATGAAGCGGAGACAGAGTGTTCGTTCGAGTGTGAGGAGCCATGTCTTCAGTTTGTGAAGACGTGGAACCTGAGGCCGAGGAAGCCGATNACGAAGCCGCCTCCGGTTGCCTTCAACAATGGCGGAGGAAGAGGAGGACCGAGGGGTGGTGCGCCGCGGGCGAGCAAGCCACGGCCTGCGGCGACTCGGACACGGCCGCCTCGGGCGGGGGCGGAGGAGAAGGAGAGGGCTGCACTGAAGAGGCCGGCGTTCTCGGTGTCTCTCATGAAAGAGGAGATAGAGGAGGATTTCGTGAANATGACTGGGGCCAAGCCTCCCAAGAAGCCTAATCAGAAGAGACCAAGGGCTGTCCAGAAACGGCTTGATGCGTGTTTTCCAGGCTTGTGGTTGGATTCTGTGACCCCACAATTGTACCGAGTTCCGGAAGCACCTGTAAAATTAAAGAATCCGCACTTGAATCTATTGATTCGTGCTATTCACACCTTGGAGGCTGGAGCAAGAATAGTATGCTTGAACATTGGTTGCCCAAACCCACACATTGATGAGCAGTTTCTGATATTTAGATACAATACAAACGATTGTCTCTTTTTGCCATTGGATTCAGCAGCAATCTGAAAAGTTGACCTATTGCGGAATTTCTGGATCCATGCCTATTTATAACTGCCAAGTGCCAAGTATTTGCTCTTCCTCTCTGGATCCACCCCGGCCCGCCGAGTTGGTGGGCCAAAGCGGGCCACTGGTTCAAAACATCAACCCGGCCCACCAAAAAGGTGGACTCAGCGGATCGGCCTGCCGAGCCCAGGCCGTTTTGTCACCAAAAAAATTATGGGACCAAAATCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01203	50639	58233	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001203s00034513.1	PF07797.9	DUF1639	350	400	6.60E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.289
SRR1783600	control	5.962
SRR1783602	moderate drought stress	9.758
SRR1811619	moderate drought stress	9.556

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.180
DRR006520	Root Summer glycyrrhizin high producing strain	2.072
DRR006521	Root Winter glycyrrhizin high producing strain	3.048
DRR006522	Root Winter glycyrrhizin high producing strain	2.875
DRR006523	Root Summer glycyrrhizin low producing strain	1.331
DRR006524	Root Summer glycyrrhizin low producing strain	1.533
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.986
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.053

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.042
SRR2868004	Drought Stress (root)	4.534
SRR2967015	Control (root)	5.555

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.297
SRR9715740	Leaf	1.910
SRR9715741	Leaf	1.496
SRR9715739	Root	1.711
SRR9715742	Root	1.375
SRR9715743	Root	1.564

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.917
SRR8749028	MeJA induced 9h	3.754
SRR8749029	MeJA induced 9h	0.679
SRR8749030	Uninduced	0.525
SRR8749031	Uninduced	0.290
SRR8749032	Uninduced	0.392

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.743
SRR8400027	Control - Root	9.197