Gene detail

Gene detail information of Glyur001201s00028281.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68810.1	9.00E-27	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	AFK43226.1	8.02E-149	unknown [Lotus japonicus]
Swissprot	tr\|Q9S7Y1\|BH030_ARATH	2.00E-32	Transcription factor bHLH30
trEMBL	tr\|I3SSI4\|I3SSI4_LOTJA	3.00E-149	Uncharacterized protein {ECO:0000313\|EMBL:AFK43226.1}

Sequence

Transcript Sequence

>Glyur001201s00028281.1
ATTTTGTTGATCTCAAATCTGAAAAGAAAGAAAGAAGACAAGAACTTCATCAGCTCTTTAAAAAGTGAGTGGTGGTGTTGTAGTCCCCCACCATAAGAGGCAATAATCCGTAGCAGAAGCAGCAGTACTCTCTGGATCTCAGCAAAACCCACTGGCCACTATCATCATCATCATAAGACACTCACTCACTGTGTACACTACACACACACACACACACACACACACACACACACACACCTGACACAGACACTCCACTTTTCACTGCATCTCTCATCATTATTCCATATACAGTCCAAACCCCAACATGACAAAGAGCAAGCCTTTGCCTTTTCATCGTTGAATGAACTTGTCTCAAACAGAAACAAGCCTTTGCCTTTGTTTACACCTTTTCCTTACATAAATTACACAACACACAACACAGCTTCAGCTTCCAAGGTTGCTTTCTGTGTCTTGTCTCCAAAAGCATATTCTTCTTCCTTTGAGTCTCTTTCCACTTCACACCCTATTGGGACCCGTGTTTTGTTTGCCATGGAAATGGAAGCTTTTGCCCCCACGCGGATGATTAGTGATGGTTTTCAAGTAAGTTCAGGTTTAATTGGAAGTGGGTATGCTTCGTCTTCGTCTCTGGTTTTGGATAGGGAAAGGGGAGAGCTTGTGGAGGCACCTGTCAAATTGGAACGCAAGGGTGTGTCCCCTGAGAGAAGTATTGAAGCCTTGAAGAATCATAGTGAGGCAGAACGGAGGAGGAGAGCAAGAATTAATGCACATCTTGATACCCTTCGCAGTGTGNTTCCAGGTGCTAACAAGTTGGACAAAGCAACCTTACTGGCTGAGGTTATTAAACATCTGAAAGAGCTGAAAACGGATGCAGCACAAGCCAGTGAAGGGTTAATGATACCAAAGGACAATGATGAAATAAGAGTNGAAGAACAGGAGGGTGGGTTGAATGGTTTCCCTTACTCAATTAGGGCATCACTATGTTGTGAATACAAACCGGGTCTATTGTCTGATATAAGACAAGCACTTGATGCACTTCATCTCATGATAATAAGGGCAGAGATTGCAACCTTGGGGGGAAGAATGAAGAATGTCTTTGTGATAATTAGCTGCAAAGAACAGAACTTTGAAGATGCCGAATACCGTCAGTTTCTGGCTGGATCTGTTCACCAAGCTCTTAGATCTGTGCTTGATAGATTTTCTGTTTCACAAGACATGTTAGAAACCAGGAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGGAGATTTCTTATAAGAAACTTGTTTTCTTTTTGATGAATTTAAATTTCCAGATGAATAGCATATATCTGATTATGATTATGAATGAGGGAGTGAGTGAGTGCCATCAGCAATTTCAGGTGCCATGGAAACTGGGGTAGATATAGTGGAATGTTGTCCTTCCACTCTTCTAATATGGATTTGTACTTTCTGAAGAGGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01201	67011	69268	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001201s00028281.1	PF00010.21	HLH	64	110	9.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.883
SRR1783600	control	5.171
SRR1783602	moderate drought stress	7.642
SRR1811619	moderate drought stress	7.601

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.795
DRR006520	Root Summer glycyrrhizin high producing strain	6.642
DRR006521	Root Winter glycyrrhizin high producing strain	2.583
DRR006522	Root Winter glycyrrhizin high producing strain	2.412
DRR006523	Root Summer glycyrrhizin low producing strain	6.532
DRR006524	Root Summer glycyrrhizin low producing strain	6.746
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.745
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.708

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.522
SRR2868004	Drought Stress (root)	24.061
SRR2967015	Control (root)	28.368

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.504
SRR9715740	Leaf	1.222
SRR9715741	Leaf	1.095
SRR9715739	Root	1.412
SRR9715742	Root	3.294
SRR9715743	Root	2.740

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.684
SRR8749028	MeJA induced 9h	40.461
SRR8749029	MeJA induced 9h	10.024
SRR8749030	Uninduced	14.036
SRR8749031	Uninduced	3.987
SRR8749032	Uninduced	2.183

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.303
SRR8400027	Control - Root	9.081