Gene detail

Gene detail information of Glyur001201s00028280.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G58610.3	ketol-acid reductoisomerase
NR	XP_004487165.1	PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cicer arietinum]
COG	YP_003690422.1	Ketol-acid reductoisomerase [Desulfurivibrio alkaliphilus AHT2]
Swissprot	tr\|O82043\|ILV5_PEA	Ketol-acid reductoisomerase, chloroplastic (Precursor)
trEMBL	tr\|J7EPL5\|J7EPL5_SOYBN	Ketol-acid reductoisomerase {ECO:0000256\|PIRNR:PIRNR000118}

Sequence

Transcript Sequence

>Glyur001201s00028280.1
CGGCGCAAGCTAGCACAGACCTCTTGATGCTCAGTTGCTCACAACATAAAACACTGAACTAAAAAGCGCATGCGCCTCTCTTTGTTTCCCAACAGTTACTTGCTACAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTGCGATAATGGCGGCTGCGACGTCGTGTTCTCCGGCACTCTCCGCCGCGTCCGAAACCCTAGCCAAACCTATCACAACTAGAAGCTTCGCCACCACCAACCTCGCACTGCAATCTCCGTCTTCCAAACTCGGCTTCAAAACCCTAACGCTTCGCCGACGCGCCGCCGGAGGTGGCTCAGCCCTCGCCGCTCGCATGGTTTCGGCGCCTGCGCAGACGATAAAGCCCCCGGCCTCNCTCGATTTCGACACGTCCGTTTTCAATAAGGAAAAAATCAACCTCGCCGGACATGATGAGTTTATCGTGAGAGGAGGCAGGNATTTGTTCCATTTGCTGCCAGATGCTTTCAAGGGGATTAAGCAGATTGGTGTTATTGGGTGGGGATCACAGGGACCTGCTCAGGCTCAGAATCTACGGGACTCACTTGCTGAAGCGAAGTCTGATATTGTGGTCAAGGTTGGCCTGAGGAAAGGTTCTAGTTCCTTTGCTGAAGCTCGAGCTTCTGGATTTTCTGAGGAGAATGGGACGCTGGGTGACATCTGGGAAACTATCTCGAGCAGTGATCTTGTGTTGCTCTTGATTTCTGATTCCGCACAGGCAGATAATTATGAAAAAGTATTCTCCCACATGAAGCCAAACAGTATACTTGGGCTTTCCCATGGGTTTCTTCTTGGGCATTTACAGTCAATAGGACTTGACTTTCCAAAGAACCTTAGTGTAATTGCCGTGTGCCCAAAGGGGATGGGTCCATCTGTGAGGAGACTCTATGTCCAAGGCAAAGAGATAAATGGGGCTGGAATTAATTCAAGTTTTGCAGTCCACCNGGATGTGGATGGCAGAGCTACTGACGTTGCTTTGGGATGGTCTGTTGCTCTTGGTTCTCCATTCACTTTTGCCACTACCTTAGAGCAGGAATATAAGAGTGACATCTTTGGGGAGAGAGGCATTTTACTTGGTGCTGTTCATGGAATTGTGGAATCCTTATTTAGGAGATACACTGAAAATGGAATGTCCGAAGATCTGGCTTATAAGAACACTGTTGAGTCTATAACAGGAATTATATCTAAAACCATCTCAACTAAGGGCATGCTAGCTGTATACAATGCTTTAACTGAAGANGGGAAAAGGGAATTTGAGAAAGCTTATAGTGCTTCTTATTATCCCTGCATGGAGATTCTGTATGAGTGCTACGAGGATATAGCCAGTGGCAGTGAGATTCGCAGTGTTGTTCTGGCTGGACGTCGTTTTTATGAGAAAGAGGGCCTACCTGCGTTTCCCATGGGTAAAATTGACCAGACCCGGATGTGGAAGGTTGGTGAGCGTGTCCGATCTACAAGATCAGCAGGTGATCAAGGCCCATTATATCCTTTTACTGCTGGTNTCTATGTGGCATTGATGATGGCCCAGATTGAGATCCTGAGAAAGAAAGGACATTCCTACTCTGAAATCATTAATGAGAGTGTTATTGAGTCTGTTGATTCTTTGAATCCTTTCATGCATGCTCGTGGTGTTTCCTTCATGGTNGATAACTGCTCAACCACGGCTAGGATGGGTTCGAGGAAATGGGCTCCACGATTTGATTACATCCTAACCCAGCAGGCCTTGGTGGCAGTGGACAATAAGGCACCTATTAACCAGGACCTAATCAGCAACTTCCTATCAGACCCAGTGCATGGAGCCATTGAAGTTTGTGCTGAACTGAGACCTACGGTAGACATTTCTGTTCCACCTAATGCAGACTTTGTTCGTCCTGAGTTGCGCCAATCCAGCAATTAGAACTTGAAGCAATTATGGCTTTTACTCGGTCAAATTATTTTCAGAGTGCTCAGTAGAACAGCTATCTTGTTAGTCCCGTTTTTCCGGTTTAGTTTTTATGATCGCGTGCTAGTATGTAAGTTGTNTTATCATTTTGTAGTCTGTACCTCTTCATGTTGTGCGAACGAGGAATGATGCTTGATGTCCCTATCAAATATCAAATATAAGGTACTAAAGTAGGTCAACAAATGTGAGTCATTTCATCGTTTACCTTTAGAGATGAGAAGGTGCACATTTACAATCCTAATAAATTGTCTACTTTTAAACAATTCAAAAACAACTTGTATTCAATTCCAAGAACAATATACAAATTGTTCTTGAACAGAAAACTATAATAAATGCATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01201	57024	60782	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00053	ilvC	EC:1.1.1.86	2-Oxocarboxylic acid metabolism	map01210
			2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Valine, leucine and isoleucine biosynthesis	map00290
			Valine, leucine and isoleucine biosynthesis	map00290
			Pantothenate and CoA biosynthesis	map00770
			Pantothenate and CoA biosynthesis	map00770

Gene Ontology

biological_process

GO:0008652 cellular amino acid biosynthetic process

GO:0009082 branched-chain amino acid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0004455 ketol-acid reductoisomerase activity

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001201s00028280.1	PF07991.7	IlvN	145	319	1.10E-30
Glyur001201s00028280.1	PF01450.14	IlvC	327	472	2.10E-16
Glyur001201s00028280.1	PF01450.14	IlvC	485	611	4.10E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	153.847
SRR1783600	control	154.735
SRR1783602	moderate drought stress	186.573
SRR1811619	moderate drought stress	185.201

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	114.232
DRR006520	Root Summer glycyrrhizin high producing strain	112.971
DRR006521	Root Winter glycyrrhizin high producing strain	47.915
DRR006522	Root Winter glycyrrhizin high producing strain	46.506
DRR006523	Root Summer glycyrrhizin low producing strain	145.193
DRR006524	Root Summer glycyrrhizin low producing strain	143.720
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.561
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.762

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	226.126
SRR2868004	Drought Stress (root)	163.961
SRR2967015	Control (root)	166.906

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.772
SRR9715740	Leaf	50.441
SRR9715741	Leaf	40.687
SRR9715739	Root	123.943
SRR9715742	Root	150.365
SRR9715743	Root	144.566

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	172.533
SRR8749028	MeJA induced 9h	161.993
SRR8749029	MeJA induced 9h	127.381
SRR8749030	Uninduced	47.710
SRR8749031	Uninduced	22.091
SRR8749032	Uninduced	41.127

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	166.978
SRR8400027	Control - Root	156.296