Gene detail information of Glyur001201s00028279 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42580.1 | 9.00E-177 | tetratricopetide-repeat thioredoxin-like 3 |
| NR | XP_004487164.1 | 0 | PREDICTED: inactive TPR repeat-containing thioredoxin TTL3-like [Cicer arietinum] |
| COG | YP_004384202.1 | 6.00E-15 | TPR-repeat-containing protein [Methanosaeta concilii GP6] |
| Swissprot | tr|Q9SIN1|TTL3_ARATH | 0 | Inactive TPR repeat-containing thioredoxin TTL3 |
| trEMBL | tr|I1M3M3|I1M3M3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G36720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01201 | 43407 | 47212 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001201s00028279.1 | PF13414.1 | TPR_11 | 159 | 224 | 4.60E-15 |
| Glyur001201s00028279.1 | PF13414.1 | TPR_11 | 377 | 439 | 2.40E-14 |
| Glyur001201s00028279.1 | PF00085.15 | Thioredoxin | 513 | 599 | 3.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.047 |
| SRR1783600 | control | 5.189 |
| SRR1783602 | moderate drought stress | 2.048 |
| SRR1811619 | moderate drought stress | 1.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.418 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.368 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.586 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.601 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.014 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.090 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.370 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.307 |
| SRR2868004 | Drought Stress (root) | 3.324 |
| SRR2967015 | Control (root) | 3.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.175 |
| SRR9715740 | Leaf | 1.032 |
| SRR9715741 | Leaf | 0.540 |
| SRR9715739 | Root | 2.751 |
| SRR9715742 | Root | 2.357 |
| SRR9715743 | Root | 2.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.595 |
| SRR8749028 | MeJA induced 9h | 4.468 |
| SRR8749029 | MeJA induced 9h | 3.714 |
| SRR8749030 | Uninduced | 0.832 |
| SRR8749031 | Uninduced | 0.471 |
| SRR8749032 | Uninduced | 1.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.285 |
| SRR8400027 | Control - Root | 7.823 |