Gene detail

Gene detail information of Glyur001201s00028276.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21470.1	7.00E-71	riboflavin kinase/FMN hydrolase
NR	XP_003541887.1	0	PREDICTED: pseudouridine-5'-monophosphatase-like [Glycine max]
COG	YP_720590.1	3.00E-39	HAD family hydrolase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q84MD8\|FHYRK_ARATH	6.00E-88	Riboflavin kinase
trEMBL	tr\|K7M2J5\|K7M2J5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G36701.1}

Sequence

Transcript Sequence

>Glyur001201s00028276.1
GTTTTCAAGACGGAAAGGTAACATGAAGGCACGTGCGGCACNAGATCATTTTGATAAAACATTCTTGTGCCATGTAATCCTCTGAAGAAGAATGCTTCAAACTCTTCTGTTGGACGGAATATCCACAAGAACATGCTGGTGACGCAATCAACTATCACTGCGAATTTATGCTTGACGTGATAGAAGATCACAGAGAGTACATATCACGCTACAAACAGTGGTTTTTAAAACCATAGATTAATACAATCCAATGAATGCAATCTGATTGTTCTTAAACGCAGGATCTGTTAGTTCTAGTTCGTTTTCCTTTGGGGTATCAGGGACCCAGAATTATATAAGCACACAGTTCATTGTTTGTTTCCATCAATTATATAAAGACACCAACTTTGGTGCTGCCATGAGCTGCTGTTGTGAGTTCAAAGGTTGCTGCAATAATGAAGCCAAGATTTTGGCTGTCATTTTTGACTTGGATGGCACACTTCTGCATACTGAAAGGGCTACAAGGGGTGTGTTGAATGAGTTTTTGGCTACGTATGGGAAAGAACTGGAGAGGGAAAAGGAAGAAAAGAAGAGGTTGGGGATGACACAGAAGGAGTCAGCAGCTGTAACTGTTAACGACTATCAACTCCCATTGACTACTGACCAATTTATCAAAGAAATCACTCCTCTCTACAGGGAAAGGTGGGCAGAAGCCAAAGCATTGCCTGGTGCTAATCGCCTTATCAAACATCTCGTGAGAAATGGGGTGCCAATTGCTCTCGCCTCAAACTCCTTGCGAGAATACATAGATGCAAAAATTTCTCATCATAAAGGTTGGAAAGAAAGCTTCTCTGTAATTCTAGGAAGTGACCAGGTTAAAGCTGGGAAGCCCGCTCCTTATTTATTTGAAGAAGCTGCCAAGAAAATGGGTGTACATGCAGTTAACTGCCTGGTGATTGAGGATTCNTTGGTTGGTGTCAAGGCAGCTAATGCTGCAAAAATGAAGATAGTGGCTGTACCATCTCGAAGGGAATCTGATTGTCATGAGCTAGCAAATGTTGTTCTTCATTCACTTTTAGAGTTTCAGCCTGAGCAATGGGGTCTTCCACCTTTTGATGATTGGGTAGATAACACATTGCCTATTGAGCCAATTCATCTGAGTGGTTTGTATATTACCGGATCTCTACTTAGAACCACAGAGAATGCAACATTTGCTATTCCTGATCAAGTTGTTGGGCTTTACTTTGGTTGGGCCAAGGTTGATANGGATCGGAACTTTAAGATATTGGTTAGCATTAATTTGGACTTCTCCAGTGTTGCCTACAAAAAAATACATGTTTGGCTTATTGATGCAAACAGTGACAATAAATCTGAGCAGCAAATGCAAATCCGTCTTGTTGGCTACATAAGAGCGTGGGATAACAAGGAACTCGGGTCAATGCAATTGGAGAAACTTGAAGAATACAAGTCCATTGCCAGAGCTTCACTAGATTTGCCATCATTCACTAGTTTTTTCTAGAACAGATTCACATAGAGGAGACAGTCAAGTGACCTTATAATTGAGGAAGATGGAATAATTATGTAACTTGTTGCAGCTTTCATAATGATTAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01201	35326	40070	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K20884	FHY	EC:2.7.1.26 3.1.3.102	Riboflavin metabolism	map00740

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009231 riboflavin biosynthetic process

molecular_function

GO:0008531 riboflavin kinase activity

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001201s00028276.1	PF13419.1	HAD_2	20	199	1.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.949
SRR1783600	control	1.958
SRR1783602	moderate drought stress	2.254
SRR1811619	moderate drought stress	2.325

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.571
DRR006520	Root Summer glycyrrhizin high producing strain	4.416
DRR006521	Root Winter glycyrrhizin high producing strain	1.216
DRR006522	Root Winter glycyrrhizin high producing strain	1.291
DRR006523	Root Summer glycyrrhizin low producing strain	5.062
DRR006524	Root Summer glycyrrhizin low producing strain	4.882
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.535
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.554

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.389
SRR2868004	Drought Stress (root)	11.128
SRR2967015	Control (root)	11.870

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.924
SRR9715740	Leaf	0.692
SRR9715741	Leaf	0.964
SRR9715739	Root	0.156
SRR9715742	Root	1.045
SRR9715743	Root	1.236

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.693
SRR8749028	MeJA induced 9h	3.009
SRR8749029	MeJA induced 9h	1.071
SRR8749030	Uninduced	2.450
SRR8749031	Uninduced	1.359
SRR8749032	Uninduced	0.943

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.620
SRR8400027	Control - Root	52.790