Gene detail

Gene detail information of Glyur001201s00028273

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27220.1	5.00E-10	Frigida-like protein
NR	KEH39296.1	0	frigida-LIKE protein [Medicago truncatula]
COG	YP_002771216.1	1.00E-21	hypothetical protein BBR47_17350 [Brevibacillus brevis NBRC 100599]
Swissprot	tr\|Q67ZB3\|FRL3_ARATH	1.00E-12	FRIGIDA-like protein 3
trEMBL	tr\|A0A072VCH7\|A0A072VCH7_MEDTR	0	Frigida-LIKE protein {ECO:0000313\|EMBL:KEH39296.1}

Sequence

Transcript Sequence

>Glyur001201s00028273.1
ATGAGGCCCCTATGCACGGCTTTGTTGCAGCGGAGTTTCACAGAACTTGGGTTGCCGCCGGCGGCAATGGATAGAGGTTTCGGTGAGAACAGCGGCGGGGAAGCCGCCGTGGGAGGATTTTATGTGGTGTCCATACCACTGCCGAGTCTTTCCATAGTTTGCATAATGGCTGATGAGGCTTCTGATAAGCCAAAGTTCTGTGATGCTGCTGCTGCTGATGGGCATGTAACTTTGAAGCGGCACACAGAATGTGAGAAAAATACANGGCATTCAGAAGTGAGGAAGCCGGTTTCTTATGAAGAAGACTCCGATGATGATCTACCTTTGTCAGCAAGGTTATTGCGGATTCATAAATCGGGAACATGTAACAATAACTGTGATGACTCTGTTAAGAAGGGGGCAGTTAAGAGATCATNTGATAACAGCAATCCCTTGCACATTCCGGTTAAGAAACCAAAGGCATCACCATACGATGATGACAACTACGACGACAATATTCCTATTGCCCAGAGAATTAAGAGGTCGGCCATATCATTCGATAAATCATTTTCCATGGCGAAGAAGTTCATAGAGAAAGAGCTTGCGTTGGTTGAGAAATCGTTTGANGAATGCCAGAGGAAGAGACGGGTAGAAGAGCAGAGATTGCTCTCCCTGCAGAGAGATATTGAGCAGTGCTCCAAAGAGCTTGAAAGTAAGAAATCACAAGTTGGNCATGTTCGAAGAATTAANGAAGTTCACAAGAAAATGCAGCGCAAAATCGAAGAATGTGCCACGGATCTTGTAGCAAAGGAAGCGCATCTCTATNTGATGGAGGGCTTGATTAGGGAGCGCAAGCAAGAGCTCAAGACAATTGATCAAGTCAAGGATAACGCTGATAGAGACCGTGAAAGGAAGGAAGAGGAACTCAAGGCTCTTTCCCAAAAAATTGCTGGATCTATTGAGGAACTTAAGACCAGTGAGAAAGATCTTGATGCAATACAAATAGCAATTGATGGACAAGCAAAAGAANTAGTGTCAGAAAGGAAGAAGTATCTCGAGGTAATGTCATTAAAGAGTGAGGAGCAGGCNCAAATGAAGCACTTTGAGTCAATGAAGAAGCAATATGAAGGTCANGTTAAGGACCTTGAGTCAAAAGAGAAGCAGTGTGCAGGACGAGTGAAGGAGCTTGANTCAAAGGNGCGGTACGTTGAACGACNAGTNAAGGAGCTTGAGTCAAAAAAGTGGCGACTTGAAGGCCAAGTGAAGGAACTCGAATTAGAAAAGAAGTATTTCGGAAGCCGAGTGGAGGAGCTCAAATCAAAAGAGAAGCAATCTGAAGGACGAGTAAAGGAGCTAGAGTCAAAAGTGAAACAACTTGAAGGCCGAANGAAAGAGTTTAAATCAAAAGACGAGCAATTTAAACGCCAAGTGAAGGAGCTTGAATCCAAAAAGAAGCATTATGAAAGCCAAGTGAAGGAGCTCGAATCAAAAGAGAAGCAATTTGAAAGACGAGGGGAGGAACTTAAATCAGAAGAGAATAAGTTCAAAGTACAAGAGAAGGAGCTCAATTCAAAAGAGAANCGGTATGATGGAAAAGTGAAAGAACTCGTTTCTGAAGANAAACAGTTTGAAGTGCAAGTGAAGGAGCTTAAATCAAAAGGGAAGCAGTTTGAAAGACAAGTGAAGGATCTTGAGTCAAAGCAGAATANATTTGATGGACAACTGAAGGAGCNTGAGTTAATAGAGAAGCAACATGAAGCATTAATAAAACCTTTNGAAGAGGAAAAGGATTCAGTTACATCTTACACAGATGGAAGTTTGCAGTTGCTCCCAAGCATGCATACGGATGAACTCGAGTCGCTNGACGATGAAATTCTGGTCAATCTCATGGCATCATCAGATCCATCNGAAGTTGTTTTGGATATAATACAGAACCCAATTNTTACACAATGTAGGAAGGGAGACAATGCTNTNATTATTGATGGTCACCACATTGTTCTGCTAGATCAACTGCGGAAAATCTCACCACGTATTAAACCTCATGTAAGAGAAGAAGCAATGAAGCTGGCACTTGATTTGAAAGCAAACATGAGTGAAAATACTGAAGATTCTTTGTTGGTTCTGGGTTTTCTTCTCCTTTTGTCAATCTTTGGNTTGGCTCCTTCTTTTGAAGAAGATGAAGTTTTAAAGCTTTTTGGATTTGCTGCACAGCATATGATTGCTGTAGAGCTGTTTGGGACCCTGGGTTTGGCGGATAAAATTTCTGATTTTGTTCAGAGTCTTATTAGGAAGCAGCAGCATATTGAAGCTGTTAGATTCATTTGTGCATATAAGTCGGCCGACAAGAATCAGACAACTGATCTCTTGCGAGAATGCGTGCAGAATGCAAAACTGATTTCTGAGAGCAGTTGCAAGAANACCAACTCCACCGAAATCAAGGATAAGGCCAGAGATGAAGAAATTGCTAGTCTGAGAAGTGTTCTACAGTGCATTTCAGATAACAGCATAGAATGTGAGGATCTACTTAACGAGATTCAAGATCATAAGCCAAAGTTCTATGATGATGATGATGATGATGTTGATGGGTCTGTAACTTTGAAGCGGCACACAGCATGTGAGAAAAATATATGGCATTCAGAAAGGAGGAAGTCGGTTTCTTATGAAGAAGACTCTGACGACGATGATGATGTTATGAAGAGGCCAGTTAAGAGACCATTCGATAACAGCAATCCCTTGCACATTCTGGTTAAGAAACNGAAGGCGTCACCATATGATGATGACAAAGATGTCGACGACATTCCTCTTTCCCAGAGAATTAAGGTGCCACCATATGATGATGATGACGATATTCCTATTTCCCAGAGAATTAAGAGATCAGCCATATCATCTGATAAATCATTTTCCAAGGTGAAGAAGTTCATAGAGGAAGAGNTTGCCTTGGTTGAGAAATCTTTTGAGGATTGCCAGAGGAAGGGTNNGGTAGAAGAGCAGAGANTGCTCTCCCTACAGAGAGATATTGAGGAGTGCTCCAAAGAGCTTGCGAATAAGAAATCTCAAGTTGGCTGTGTTCGAAGAGTTAACGAAGTTCACAAGAAAATGCAGCGCGAAATTGAAGAATGTGCCACGGATCTTGTAGCAAAGGAAGCACAGCTGTGTTTGTTGGAGGACTTGATTAGGGAGCGTAAGCAAGAGCTCAAGACAAATGATCAAGTCATGGGTAACATTGTTAAAGACCGTGAAAGGAAGGCGAAGGAACTCGACGCTCTTTCCCAAAAAGTTACTGGNTGTACTGAACAACTAGAGACCAAAGAGAAAGAGCTTGATGCAATAAAAATATTAATTGATGGACAAGCAAAAGAACTAGAGTCAGAAAGGAAGAAGTATCTCAAGGTAATGTCATTAAGGAGTGATCAGCAGGCTCAAATGAAGCACTTCGAGTCAAAGAAAAAGCAATATGAAGGTCAGGTTAAGGAGCTTGAGTCAAAAGAGAAGCAGTGTGAAGGACGAGTGAAGGAGCTTGATTCAAAGGAGAAGCACGTTGAACGACGACTGAAGGAGCTCGAGTCAACAGAGAAGCAACTTGAAGGCCAGGTGAAGGAATTTAAATCAAAGCAGGAGGAATTTGAAAGCCAAATGAAGGACCTTGCATCAGAAAAGNAGCATTTTGAAGGCCGAGTGGAGGAACTCAAATCAAAAGAGAACCGATTCGAGCGACGAGTAAATGAGCTAGAGTCAAAAGAGAAACAACTTNAAGGCCGAGTGAAGGAGTTTGAATCAAAAGTCGAGCAATTTGAAGTCCAGNTGAAGGAGCTCGAATCAAAAAAGAAGCATTTTGAAAGGCAAGTGATGGAGNTTGAATCAAAAGAGAAGCAATTTGAAGAACGACGGAAGGAGCTTGAGTCAAAAGAGAAGCAACTTGAAGGCCAAGTGAAGGAGTTTGAATTAAAAGAAGAGGAATTTGAAGGTCAAGTGAAGGAGCTCAAATCAAAAGAGAAGCAATTTGAAGGCCAAGTGAAGGGGTTTGAGTCAAAAGAGGAGGAATTTGAAGGCCGAGTAAAGGAGCTTGAGTCAAAAGAGGAGGAATTTGAAGCTCGAGTGAAGGAGCTCGATGTAGAAGAGGAATTTGAAGGCCGAGTTAAGGAGCTCGAGTCAAAAGAGGANGAGTCAAAAGAGGAGGAATTTGAAGCTCGAGTGAAGGAGCTCGATGTAGAAGAGGAATTTGAAGGCCGAGTTAAGGAGCTCGAGTCAAAAGAGGAGGAATTTGAAGCTCAAGTGAAGGAGCTCGAATCGAAAAGGAAGCAAATTGAAGGACAAGTGAAGGAGCTNGAGTCAAAAGANAAGCAACTTGAAGCTCGAGTGAAGGAGCTCGATTCGAAAGAGGTGGAATTCAAACACCGAGTGCAGGACTTCAATTCAAAAGAGAAGAAATTTGAAATACGAGGGAAGGAGTTTGAGTCAAAAGAGATTAAGTTTGACGTAGAAGTGAAGGAGCTCGAATCAAAACAGAAGCATTTCGAAAGCCGAGTGAAGGAGCTCAAATCAAAATGGAAGCAATTTGAAGGACGAGTGAAGGAGCTTGAGTTAAAAGAGAAGCAAATTGAAGGCCGAGTGGAGGAGCTTGATTCGAAAGAGGAGGAATTTGAAGGTCGAGTGAAGGAGTTTGAATCAAAAAGGGAGCATTTTCAAAGCCGAGTGGAGGACGTCGAATCAAGAGAGAAGCAATTTGAAAGACGGGAGAAGGAACTTGAGTCAAAAGAGAATAAGTTCAAAGTACAAGAGAAGGAGCTCAAGTCAAAAGAGAAACAGTTTGAAGTGCAAGTGAAGGAGCTTGAATCAAAAGAGAAGCAGTTTGAAGGACAAATGAAGGATCTTGAGTCAAAGCGGAATAAATTTGATGTACAACTGAAGGNGCTTGAGTTAAGAGAGAAACAATATGAAGCATTAATAAAACCTTTCGAAGAGGAAAAAGATTCAGATAATCAATTAAGTCCTACCATTGATGGAAGTTTGCAACTGCTCCCAAGCATGCATACAGATGAACTCAAGTCGGTCGGCAATGTCATTTTGGTTAATCTCATGGCATCATCAGATCCATCAAAAGTTGTTTTGGATATAATACAGAACCCAATTATTCCACAATGTAGGCAGGGAGACAATGCTGTAATTATTGATGGTAACCACATCATTCTGCTAGAACAACTGATGAAAATCTCACCAGATGTTAAACCTCTTGTAAGAGATGAAGCAATGAAGCTGGCACTTGATGTGAAAGCAAACATGAGTGAAAATACTGAAAATTCTTTGTCGGTTCTGGGTTTTCTACTCCTTTTGTCGATTTATGGACTGGTTCCTTACTTCGATGAAGATGAAGTTTTAAAGCTTTTTGGATTTGCTGNGCAGCACAAGATAGCTGTAGAGCTGTTTGGGACCCTGGGTTTGGCGGATAAAATTTCTGATTTTGTTCAGAATCTTATTAGGAAGCAGCAGCATATTGAAGCTGTTAGATTCATTTGTGCATATAATTCGGCCGACAAGAATCGGACGATCGATCTCTTGCGAGAATGCGTGCAGAATGCAAAACTGATTTCTGAGAGCAGTTGCAAGAAAACCAACTCCACCGAAATGAAGGANAAGGCCAGAGATCAAGAAATTGCTACTCTGAGAAGTGTTCTACAGTGCATTTCAGATAACAGCATAGAATGTGAGGATCTACTTAACGAGATTCAAGATCGTATTGTTGGGCTAAATAGACAGAAAGGCAAATAATAGCCTTTTGTACAGGAACAAGGGCCATCCCCCAAAATGTAAAGAAGTGTGGTAAGGAAAACCTGCTAACACAATA

Protein Sequence

>Glyur001201s00028273.1
MRPLCTALLQRSFTELGLPPAAMDRGFGENSGGEAAVGGFYVVSIPLPSLSIVCIMADEASDKPKFCDAAAADGHVTLKRHTECEKNTXHSEVRKPVSYEEDSDDDLPLSARLLRIHKSGTCNNNCDDSVKKGAVKRSXDNSNPLHIPVKKPKASPYDDDNYDDNIPIAQRIKRSAISFDKSFSMAKKFIEKELALVEKSFXECQRKRRVEEQRLLSLQRDIEQCSKELESKKSQVGHVRRIXEVHKKMQRKIEECATDLVAKEAHLYXMEGLIRERKQELKTIDQVKDNADRDRERKEEELKALSQKIAGSIEELKTSEKDLDAIQIAIDGQAKEXVSERKKYLEVMSLKSEEQAQMKHFESMKKQYEGXVKDLESKEKQCAGRVKELXSKXRYVERXVKELESKKWRLEGQVKELELEKKYFGSRVEELKSKEKQSEGRVKELESKVKQLEGRXKEFKSKDEQFKRQVKELESKKKHYESQVKELESKEKQFERRGEELKSEENKFKVQEKELNSKEXRYDGKVKELVSEXKQFEVQVKELKSKGKQFERQVKDLESKQNXFDGQLKEXELIEKQHEALIKPXEEEKDSVTSYTDGSLQLLPSMHTDELESLDDEILVNLMASSDPSEVVLDIIQNPIXTQCRKGDNAXIIDGHHIVLLDQLRKISPRIKPHVREEAMKLALDLKANMSENTEDSLLVLGFLLLLSIFGLAPSFEEDEVLKLFGFAAQHMIAVELFGTLGLADKISDFVQSLIRKQQHIEAVRFICAYKSADKNQTTDLLRECVQNAKLISESSCKXTNSTEIKDKARDEEIASLRSVLQCISDNSIECEDLLNEIQDHKPKFYDDDDDDVDGSVTLKRHTACEKNIWHSERRKSVSYEEDSDDDDDVMKRPVKRPFDNSNPLHILVKKXKASPYDDDKDVDDIPLSQRIKVPPYDDDDDIPISQRIKRSAISSDKSFSKVKKFIEEEXALVEKSFEDCQRKGXVEEQRXLSLQRDIEECSKELANKKSQVGCVRRVNEVHKKMQREIEECATDLVAKEAQLCLLEDLIRERKQELKTNDQVMGNIVKDRERKAKELDALSQKVTGCTEQLETKEKELDAIKILIDGQAKELESERKKYLKVMSLRSDQQAQMKHFESKKKQYEGQVKELESKEKQCEGRVKELDSKEKHVERRLKELESTEKQLEGQVKEFKSKQEEFESQMKDLASEKXHFEGRVEELKSKENRFERRVNELESKEKQLXGRVKEFESKVEQFEVQXKELESKKKHFERQVMEXESKEKQFEERRKELESKEKQLEGQVKEFELKEEEFEGQVKELKSKEKQFEGQVKGFESKEEEFEGRVKELESKEEEFEARVKELDVEEEFEGRVKELESKEXESKEEEFEARVKELDVEEEFEGRVKELESKEEEFEAQVKELESKRKQIEGQVKELESKXKQLEARVKELDSKEVEFKHRVQDFNSKEKKFEIRGKEFESKEIKFDVEVKELESKQKHFESRVKELKSKWKQFEGRVKELELKEKQIEGRVEELDSKEEEFEGRVKEFESKREHFQSRVEDVESREKQFERREKELESKENKFKVQEKELKSKEKQFEVQVKELESKEKQFEGQMKDLESKRNKFDVQLKXLELREKQYEALIKPFEEEKDSDNQLSPTIDGSLQLLPSMHTDELKSVGNVILVNLMASSDPSKVVLDIIQNPIIPQCRQGDNAVIIDGNHIILLEQLMKISPDVKPLVRDEAMKLALDVKANMSENTENSLSVLGFLLLLSIYGLVPYFDEDEVLKLFGFAXQHKIAVELFGTLGLADKISDFVQNLIRKQQHIEAVRFICAYNSADKNRTIDLLRECVQNAKLISESSCKKTNSTEMKXKARDQEIATLRSVLQCISDNSIECEDLLNEIQDRIVGLNRQKGK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01201	4009	19776	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001201s00028273.1	PF07899.6	Frigida	598	840	5.00E-58
Glyur001201s00028273.1	PF07899.6	Frigida	1649	1912	1.60E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.106
SRR1783600	control	2.151
SRR1783602	moderate drought stress	2.434
SRR1811619	moderate drought stress	2.480

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.050
DRR006520	Root Summer glycyrrhizin high producing strain	2.895
DRR006521	Root Winter glycyrrhizin high producing strain	0.284
DRR006522	Root Winter glycyrrhizin high producing strain	0.284
DRR006523	Root Summer glycyrrhizin low producing strain	3.444
DRR006524	Root Summer glycyrrhizin low producing strain	3.465
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.149
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.156

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.525
SRR2868004	Drought Stress (root)	2.852
SRR2967015	Control (root)	2.635

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.720
SRR9715740	Leaf	0.727
SRR9715741	Leaf	0.556
SRR9715739	Root	0.214
SRR9715742	Root	1.023
SRR9715743	Root	0.855

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.969
SRR8749028	MeJA induced 9h	2.015
SRR8749029	MeJA induced 9h	1.718
SRR8749030	Uninduced	0.307
SRR8749031	Uninduced	0.197
SRR8749032	Uninduced	0.347

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.234
SRR8400027	Control - Root	3.987