Gene detail

Gene detail information of Glyur001200s00029490

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23980.1	3.00E-84	auxin response factor 9
NR	KHN16369.1	0	Auxin response factor 9 [Glycine soja]
Swissprot	tr\|Q9XED8\|ARFI_ARATH	2.00E-107	Auxin response factor 9
trEMBL	tr\|I1JM14\|I1JM14_SOYBN	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur001200s00029490.1
GACAGAGACAACAAAAACAACGCGTCCAACGTCGTTGAGTTGATGAAAAACTGCTTCTTTTCTGCTTCTTCTGTCTGTAACCGTTTTCTGAGGATTGCTTTCTTCTTGTTGTTGCTGCTGCTTCTGTACGGTCGGTCTTACGTTACACTCTCTCTGTCGCTATCATCATCTCGACCCTCTCTTCTTGTTCTTCTTCACAGTTTCTTTCAGTCGTGACAAAGCATAGCAACGGGATCTCGTGATTCTCGTTAACAAAAGAGGATTTTTGAGATTGGTTCCAAAAGCGTGACAAACAAACCCCTTTTTTTTAAAAATTCAATTTTTTTTATTTTTATGTGGTTTCTTCTTCTGGGGTTTGTTGACTCGTGTTGAAGGATGTTGAACCGAGGGTCAAATGTTTCGGCCGAAGAGGCTTCTACCAATCAGGAACTGAATCAGAGGATCCCTCTCTTGAAACTTCCTACAAAGATCCTTTGTCGTGTGGTGAATGTCCATTTACTGGACATGTCTGAACCAACACCGACTCAGGAATTGGTTGCCAAGGATCTTCACGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTAAAGGACATTGGAGGACGAGCCAGTTCATCATTAGCGTGAACAAGTACTTGGAGGCTGTCAACAACAAGTTTANTGTTGGGATGAGGTTCAAGATGAGGTTCGAGGCTGATGATTCTGCCGAGGCTGACAAAAGATTTTCCGGTACCATAGTTGGAGTTGAAGATATTTCTCCCCATTGGGTAAATTCGAAATGGCGATCACTTAAGGTTCAATGGGATGAACCTGCAGCTGTTACAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTGTCTTCTGCTTCTACACCCTCAGTTCAACCTACAGTTGTGAAAACTAAAAGACCCCGGCCACCGAGTGAAATTCCAGATGCCGACACGATTTCAGCCGCATCTGTTTTCTGGGATGCTGGGATGACACAGGCCGATATGACACCACAACGTAGTGTTTTAGCCGAAGGCAAAAAAAGTGATAGTACCAGTATTTGGCATCATAAGCAAACCGATATGAGTAGTAAAAGCAACAGTAACACTGTATTAAGGAACTGGACCGAAGGAAGTTGGCGATCTTCTCCCCATTTATTTCAGGACACAACAGATGATAGCAAGAGTGTCTCGGCTTGGCCTGTTTCACAGCCTCACTCGTCTCAATTGAACATCGATCATGTACTTGATCAAGTTGACAAGGAGAATAAAGTAGAGACTGCGACAAGTTATCGATTGTTTGGAATTGATCTTATTGATCATTCCAGGAACTCAGCTGCAGTAGAGAAACCATCTTCGCATTCAGTAAATGTAACCGGAGTTACCGCTGAAGTTTCCGCCAGCACCTTGTCCAGCACTGATACCGGCCGTAAGTCTGACGTCTCAAAGGCTTCTCATGAGAGGAAACAAGAAGAGCAGCAGGTATCACCAAAGGAGACTCAGAGCAAGCAAATTTGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTTGCAGTGGGCCGTGCCGTGGATTTGACGATGTTGAACGGGTACGACCATCTTATTGGTGAACTGGAGGAGATGTTTGACATAAAGGGGCAGCTTCAACACAGGAATAATTGGGAGATCGTCTTCTTGGACGATGAAGGGGATATGATGCTCATGGGAGATCATTCATGGCTTGAATTTTGTCATATGGTTAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGTGTTCGGGATCAGGAAGCAAGCGACCNATCTCTTCAATAGAAGAAGGGACCGTAATAAGCTCGGACACAGCCGAAACTTGAAACTCTTGACATTCTTTTCTTGTCGTCGTCTCACCTTCCCATTTGTCACCACCCAACTGTTGATCCTCTTATTGTTTGTGAGAAAAAAGTTGTTTCTATTTTTGGCTATGTAAGTTTCATGTTGTTATTNCATTACATGTGAAACATACACTAGCTAATTGTAACTTGATTTTTAGGGACACCAGGCATTAATTGTGGCTATGCTAGAAAAAGACCAAAATAGATTTTTACTTTAATAAATAAATTAGTGGGGAAATTGGCAAATCTAGGCTTAACATTGAATATACTCATGTTAAGTTGGAAGAAATGTTGTGGGTTGCTGTTTATTAAGACTCTTGCCTTTTTTTTTTTTTTTGGTTCAAAGGGGCCATATTTGTGCTGTGTAATGCATATTAGTGTTGTGCTGTGTGCCTTGTAAAATTCCCATTTGGTTGNGTCAATGTCCCATCAGTGACTTTGAATTATGGCATTAAATTGCTGCAATTGTATTGTGAAGAAAACACAGTGGTCCACTGCACCAGTGTGAGGGCAGTGATTCTCCTGACAAATGGGTTGAATCTGGCAGGGTGGTGGCACCACCCCAAAATTCACCTCAGGCCCATAATTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01200	56697	61467	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001200s00029490.1	PF06507.8	Auxin_resp	76	140	3.60E-22
Glyur001200s00029490.1	PF02309.11	AUX_IAA	292	469	3.00E-28
Glyur001200s00029490.2	PF06507.8	Auxin_resp	11	75	2.90E-22
Glyur001200s00029490.2	PF02309.11	AUX_IAA	227	404	5.10E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	63.448
SRR1783600	control	64.026
SRR1783602	moderate drought stress	40.957
SRR1811619	moderate drought stress	41.101

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	65.210
DRR006520	Root Summer glycyrrhizin high producing strain	64.339
DRR006521	Root Winter glycyrrhizin high producing strain	37.825
DRR006522	Root Winter glycyrrhizin high producing strain	36.581
DRR006523	Root Summer glycyrrhizin low producing strain	143.398
DRR006524	Root Summer glycyrrhizin low producing strain	142.222
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.589
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.151

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	132.215
SRR2868004	Drought Stress (root)	150.115
SRR2967015	Control (root)	145.994

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.865
SRR9715740	Leaf	44.249
SRR9715741	Leaf	57.404
SRR9715739	Root	36.310
SRR9715742	Root	92.186
SRR9715743	Root	82.372

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.597
SRR8749028	MeJA induced 9h	22.180
SRR8749029	MeJA induced 9h	28.225
SRR8749030	Uninduced	23.135
SRR8749031	Uninduced	13.613
SRR8749032	Uninduced	16.842

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	82.435
SRR8400027	Control - Root	80.435