Gene detail

Gene detail information of Glyur001200s00029486

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22920.2	7.00E-97	serine carboxypeptidase-like 12
NR	KHN45449.1	5.65E-164	Serine carboxypeptidase-like 11 [Glycine soja]
COG	YP_002430787.1	3.00E-17	peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|O81009\|SCP12_ARATH	1.00E-117	Serine carboxypeptidase-like 12 (Precursor)
trEMBL	tr\|I1K876\|I1K876_SOYBN	3.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G05020.2}

Sequence

Transcript Sequence

>Glyur001200s00029486.1
GGTATGTTGGGTTGGGGGAAACAGATGATGACATGCAGGTGTTTTACTACTTCATTAAGTCAGAGAACAACCCTGAGAAAGACCCTCTTATGCTTTGGCTAACTGGTGGTCCTGGTTGCTCTTCATTGTCGGGCCTTGCCTTTCAAATAGGTCCAGTTGCATTTGAAGAGAAGGAGTACGACGGGAGCGTGCCTAATTTGGTCTTGAGGCCAAAGTCCTGGACAAAGGTGTGTAGCATTATTTTTGTAGATTTGCCACTTGGAACNGGTTTCTCATATGCAAAAAATCTCACTGCTCAACGAAGTGACTGGAAATTAGTTCACCATGCCCATCAATTTCTTAGAAAGTGGCTGATTGATCACTCGGAATTTCTTTCAAATGAATTGTACATTGGAGCTGATTCATACTCTGGCATTCCTGGTCCTGCTATTGTTCAAGAAATTTCAAATGGAAATGATAAAGGTCTCCAACCAAGGATAAATCTCCAGGGATATCTGCTGGGGAACCCCGTGACAACACGAAGAGAAGATAATGATCAAATCCCATATGCTCATGGAATGGGACTCATTTCTGATGAACTCTATGCGTCNCTGCAGAGAAATTGTAAAGGAGAGTATATGGATATAGATTCCAGAAATGAATTGTGTTTAAGAGATGTCCAATACTTTCATGAGGCAAGAATTAATACGTTCAACATTTTGGATCGCTATTGTGAAGATGATTCGCGTCTGTGGAGGAGATCTTTGACTCAGAATGGGGATCATGATGCNGTTGTTCCTTTCTTGTCTACTCAAGCGTGGATAAGGGCTCTAAACTACTCCATTGTGGATGATTGGAGGCCATGGTTTGTAAATGGCCAAGTTGGAGGATACACAAGGACTTACTCGAATCGAATGACATTTGCAACTGTGAAGGGTTCAGGACATACAGCTCCTGANTACAAGCCTGAGGAATGTTATGGCATGTTCACTAGGTGGATATCTAATTTGCCTTTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01200	39990	47907	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001200s00029486.1	PF00450.17	Peptidase_S10	2	228	2.00E-66
Glyur001200s00029486.1	PF00450.17	Peptidase_S10	236	318	1.60E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.451
SRR1783600	control	40.978
SRR1783602	moderate drought stress	15.642
SRR1811619	moderate drought stress	16.239

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.074
DRR006520	Root Summer glycyrrhizin high producing strain	31.039
DRR006521	Root Winter glycyrrhizin high producing strain	6.025
DRR006522	Root Winter glycyrrhizin high producing strain	5.611
DRR006523	Root Summer glycyrrhizin low producing strain	10.868
DRR006524	Root Summer glycyrrhizin low producing strain	10.492
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.504
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.789

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	70.723
SRR2868004	Drought Stress (root)	72.031
SRR2967015	Control (root)	92.513

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.467
SRR9715740	Leaf	32.804
SRR9715741	Leaf	30.376
SRR9715739	Root	19.868
SRR9715742	Root	50.875
SRR9715743	Root	45.156

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.815
SRR8749028	MeJA induced 9h	26.723
SRR8749029	MeJA induced 9h	15.944
SRR8749030	Uninduced	30.467
SRR8749031	Uninduced	18.195
SRR8749032	Uninduced	12.708

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.490
SRR8400027	Control - Root	82.807