Gene detail

Gene detail information of Glyur001200s00029484.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55510.1	7.00E-166	branched-chain alpha-keto acid decarboxylase E1 beta subunit
NR	XP_004506580.1	0	PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Cicer arietinum]
COG	YP_003913633.1	7.00E-143	transketolase central region [Ferrimonas balearica DSM 9799]
Swissprot	tr\|Q9SAV3\|ODBB1_ARATH	0	2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial (Precursor)
trEMBL	tr\|G7JTF7\|G7JTF7_MEDTR	0	Branched chain alpha-keto acid dehydrogenase E1 beta subunit {ECO:0000313\|EMBL:AES87123.1}

Sequence

Transcript Sequence

>Glyur001200s00029484.1
CGTTCTTTGAGAACAGTAGAGACAATCCAAATCCATATCCGTGGCTCCTTTTTCTCATCCCTTTTTTATTTCCTTTTTTATTAATCTTCGCCATCCATGCACTCAATCCACAGGGCAAAGCTCTGAAAACTCTTCAGAACTTCTAAGACATACATACCCAATCGTCTCAACTTTCAAAGTCACGAATTTGGGATATACCCAAGAAAAAGATTCAACAAATTGAAGAGAAAAGAGAAAGAAAAGAAGAGTTTTGTGTGATTCAAGTTGAAGNCCATTTTTGGGGGTAGCTAGCTAGCGTTTCACACATCATCACAATTCACAACCACCATTATCATCAATAGACATGTCGACCTGTGTGAAGAGACTTGGAAGAAGATNTGTTGTTTCTTTGGTTTCCACCACCACTAGGGGAATTTCCACCACCACCTCCTCCTCATGCATTCACAAAGATGCTGCTGCTGAGGAAGGTGTTAAATCATTGAACCTTTATTCTGCTATTAACCAAGCTCTTCACATTGCCTTGGACTCTGATCCTCGTGCTTATGTTTTTGGAGAGGATGTAAGCTTTGGTGGGGTATTCCGTTGCACGACAGGATTAGCAGACCGATTTGGTAAAAACAGGGTTTTCAATACTCCTCTCTGTGAGCAGGGTATCGTTGGCTTCGGTATTGGTCTAGCAGCTATGATTGTCAATGAAGCTGCTAAATTCAGATACCGGAGNGGGAACCAATTTAATTGTGGCGGTTTAACAATTAGAACCCCTTATGGAGCTGTGGGCCATGGTGGGCATTACCATTCTCAATCTCCTGAGGCTTTCTTCTGTCATGTTCCTGGTATCAAAGTGGTCATCCCTCGAAGTCCACGGGAAGCAAAAGGGTTATTGCTATCTTGCATAAGAGATCCAAATCCTGTTGTATTTTTTGAACCAAAGTGGCTTTATCGTTTGGCTGTTGAAGAAGTACCAGAGGATGATTACGTGTTGCCTTTATCTGAGGCTGAGGTGNTTCGGCAAGGATGCGATATCACACTTATTGGTTGGGGAGCTCAATTATCTGTAATGGAACAAGCTTGTGTTGATGCTGAAAAAGAGGGAATTTCTTGTGAATTGATAGATCTGAAGACACTAATTCCTTGGGATAAAGAAACAGTGGAGGCCTCAGTAAAGAAGACAGGAAGACTGCTTATTAGTCATGAAGCTCCGGTAACGGGAGGTTTTGGTGCTGAAATCTCAGCTTCCATTCTTGAACGCTGCTTCTCAAGGTTAGAGGCTCCTATAGCAAGAGTTTGCGGTCTAGACACTCCTTTTCCTCTGGTTTTTGAACCCTTCTACATGCCAACTAAGAATAAGATATTGGATGCAATTAAATCAACTGTTAACTACTAATACGCTTAATGATCATGTTCAATGTTCATGGTTAGTGATGCATTAGTGTGATGCACACAGTTAGTAGGAAACTCATTCATTGTGTGGAACATAAAAAAGGTCATCAAAAGAACAATGCCATTGACATGTAACACTTCGTACGAGTTAAATATATTTTTAGTCCCTGTAAATATGGAAATATTCATTTTGAGTCGCCTAATTTTAAAACGTCTCATTTTGGTCNTCATTTTCTAAAATAAGCCACATGTAGTCCCTATTCAAGGGATTTCGAAGGATTACATGTAGCCTATTGAGGGACTACATGTGGTTGATTTTAAAAAATGGATGATTAAAATGAGATATTNTAAAATGAAGGGATAAAAAATGTTGCCATATTTACTGGGATTAAAAANTCATTTAACCCTACTTTCTACTTCCTTTTACAATGCCCCATGTGCTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01200	11133	21289	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00167	BCKDHB, bkdA2	EC:1.2.4.4	Propanoate metabolism	map00640
			Valine, leucine and isoleucine degradation	map00280

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001200s00029484.1	PF02779.19	Transket_pyr	113	200	5.20E-20
Glyur001200s00029484.1	PF02780.15	Transketolase_C	217	328	3.20E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.174
SRR1783600	control	17.911
SRR1783602	moderate drought stress	23.044
SRR1811619	moderate drought stress	22.876

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.528
DRR006520	Root Summer glycyrrhizin high producing strain	10.690
DRR006521	Root Winter glycyrrhizin high producing strain	13.137
DRR006522	Root Winter glycyrrhizin high producing strain	12.502
DRR006523	Root Summer glycyrrhizin low producing strain	7.109
DRR006524	Root Summer glycyrrhizin low producing strain	7.268
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.752
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.664

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.428
SRR2868004	Drought Stress (root)	61.938
SRR2967015	Control (root)	103.712

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.274
SRR9715740	Leaf	57.502
SRR9715741	Leaf	80.918
SRR9715739	Root	7.221
SRR9715742	Root	15.078
SRR9715743	Root	11.064

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.382
SRR8749028	MeJA induced 9h	36.751
SRR8749029	MeJA induced 9h	14.728
SRR8749030	Uninduced	27.129
SRR8749031	Uninduced	30.636
SRR8749032	Uninduced	22.654

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.083
SRR8400027	Control - Root	34.289