Gene detail

Gene detail information of Glyur001199s00031521

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48545.1	2.00E-56	histidine triad nucleotide-binding 3
NR	XP_003532253.1	6.71E-105	PREDICTED: hit family protein 1-like [Glycine max]
COG	YP_004780191.1	5.00E-29	histidine triad (HIT) protein [Pyrolobus fumarii 1A]
Swissprot	tr\|P42855\|ZB14_BRAJU	2.00E-09	14 kDa zinc-binding protein (Fragment)
trEMBL	tr\|I1KZ06\|I1KZ06_SOYBN	3.00E-105	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G45960.1}

Sequence

Transcript Sequence

>Glyur001199s00031521.1
GCTGGGAGTCCTTTTCCCACGTGAACATGCACCACTAGCGATCAATCCCCGCCGCGAGTGTGGATAAGATATAACAAGAAAACAGACTAAAAAACACACATACAATAATAATATAATAATAATAGTACTAATAAACAAAAGATGCTTGGTGTTTGCATTTTCTTCCCTCGCGCGTTTCAAACGTCAATGGCGAAGAAACACCACGAAATGCTCCTTCGCACTCTCAAAACCTCTCCTTCCCCTTTCTGAGATTCCCAAGAAGCAGCCACCACCCATGTCGAGGGACGCAAGGAGGAGGCTTTCCCTTTTGTGCTCCCACCTCAGCCCGACCCNGTTGAATCCGGATCCACCACACTCTTCTCGGGTCTCGGGTTCGGTTTGTGCTTCTGCTTCTCCTTCTTCTNNTGATGATNNTAGTTGTAAAAAACAGAGTTTGCTACAGGATTGCGTTTTCTGCAACATTATTCGTGGCCAATCACCTGCTAGAAAGCTTTATGAAGATGACACGTGCCTATGCATATTGGATACAAGTCCGTTGAGTAATGGGCACTCTCTCATTATCCCAAAATCTCATTTCCCTTCACTGGATGCTACTCCTCCATCAGTGGTAGCTGCAATGTGTTCAAAAGTTCCCTTCATTGGCAATGCAATCATGAAGGCCACCGGCTGCGATTCATTCAACCTGTTGGTTAACAATGGGGCAGCTGCTGGCCAAGTAATATATCATACTCATATCCACATAATTCCCCGTAAAGCGTGCGATTGCTTATGGGCTTCTGAGAGTTTGCTAAGGCGTCCCCTTAATTTAGATGATGAGAAAGTTTCTCAGCTTGCAGCTCGTATTCAGGAACAGTTGTTGCTATCAGACATTTGCCAAGATAGCTAGCATGAAGATTTTTGTTCAAGTNAAAGTTAGTGGGGGTTATTGATCTGTTGTAACTTGATACTTTCATATTTGCATTTAGAGGAATGTTACATGCACATATTATGTAACATAACCCTTAATGAGTGGTTGGGATTCTTATAACAATTGCTCTTAACTTAGATAAGAAAAATTTCAACTACTTGTGTTATGTTTTGGTTGCAAATATACATTTTTGGGGGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01199	46402	51815	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001199s00031521.1	PF01230.18	HIT	66	160	3.30E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.272
SRR1783600	control	12.169
SRR1783602	moderate drought stress	11.345
SRR1811619	moderate drought stress	11.282

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.717
DRR006520	Root Summer glycyrrhizin high producing strain	9.196
DRR006521	Root Winter glycyrrhizin high producing strain	3.137
DRR006522	Root Winter glycyrrhizin high producing strain	2.674
DRR006523	Root Summer glycyrrhizin low producing strain	12.132
DRR006524	Root Summer glycyrrhizin low producing strain	12.319
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.356
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.621

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.597
SRR2868004	Drought Stress (root)	17.901
SRR2967015	Control (root)	20.411

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	86.396
SRR9715740	Leaf	59.924
SRR9715741	Leaf	105.540
SRR9715739	Root	6.190
SRR9715742	Root	10.021
SRR9715743	Root	9.938

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.703
SRR8749028	MeJA induced 9h	15.730
SRR8749029	MeJA induced 9h	14.985
SRR8749030	Uninduced	12.126
SRR8749031	Uninduced	12.278
SRR8749032	Uninduced	10.402

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.340
SRR8400027	Control - Root	15.969