Gene detail

Gene detail information of Glyur001199s00031519

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G74600.1	pentatricopeptide (PPR) repeat-containing protein
NR	XP_004492291.1	PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9CA56\|PP121_ARATH	Pentatricopeptide repeat-containing protein At1g74600, chloroplastic (Precursor)
trEMBL	tr\|V7B8B3\|V7B8B3_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW12696.1}

Sequence

Transcript Sequence

>Glyur001199s00031519.1
ATGTTGAATTGCAGGAGTAATGTAAATTATCAGATCAGGCTTTTGAGTAAGCTTCGGTTCTTAGATGAGACTCTGCCATTTATAGTTGATATGACTATGACATTGTGTCCCCTTCGAATGGTCCNTCTTAATTTTATAATCAATGGAAAATTCGACAGGAAAAGTTCACAACTTGCTTGCAGATTAACCTCTTCCGTCGTTTTTGTTCAAAACCCATTTGTTTCACGCATTAAACATGTGGAAGAGTNCACTTTTTCAAACCCTTCTGAGCTCTTGCGTGATTACAAGTTTTCAGGGCAGCACAGCGCTAGGAAAACACAAGTCTTCCATGCCCATTTGCTCAAAACTCGTGATTTACAATCTGATATCTTCTCCATGAACTCTCTGCTTAATTGGTATTGTAAATCTGCTGACATGGTTGTTGCCCACAAGCTGTTTGATACAATTGCTCTTCCAAATATTGTTTCTTGGAATATTATGATATCTGGTTATGACCAAAACTCGATGTTTGAGAAGTCACTGGAGATGTTTTGTGGGATGCATTTGTTTGGTTTTGAGCCTGATGAGTTTAGTTATGGGAGTGTTCTTTCGGCCTGTATTGCTTTGCGAGCTTCAATATTTGGCAAACAGGTTTATTCACTTGTCATGAAAAATGGTTTCCTTTCCAGTGGTTATGTTCAGACTCGAATGATGGATGTGTTTTCCAAAACTTGCAACTTTAAGGAGACTCTGAGATTTTTTAATGATGCTTCATGTGATAATGTGGCGTGTTGGAATGCTATCATTTCTTTGGCAGTAAAAAATGGGGAAAGCTGGGTTGCTTTGAGTTTGTTTCGTCAAATGTGCCACGCATCTTTAATGCCCAATAGTTACACATTTCCGAGCATCTTAACAGCGTGTTGTGTGCTTAAAGAGATGCAGATTGGGAAAGGAGTTCATGGGTGGGTGATCAAATGTGGTACAACAGATGTCTTCGTGGAGACTGCTATCGTTGATTTATATGCAAAATTTGGATGCATGAGTGAAGCTTATAGACAATTCTCCCATATGCAAGTCCAAAATGTGGTCTCTTGGACTGCTATAATTTCTGGGTTTGTGCAAGAGGATGATATTACTTGTGCACTAAAGCTTTTCAAAGATATGAGACAAATAGGGCAGGAGATAAATATCTATACTGTTACTAGTGTACTTTCTGCATGTGCTAAACCTGGGATGATTGAGGAGGCGAAACAAATTCATTCCATGGTATTAAAATTTGGGTTGAATTTGGATGTCAAGGTTGGGGCTGCTTTAGTCAAAATGTATGCAAAAATAGGAGAAGTTGGACTTTCTGAGTTAGCCTTTAGTGAGATGAAAAATATGAAGGATCAAGGCATATGGTCAGCCATGTTGTCTTCTTTTGCCCAAAACCAAAATTCTGGAAGGGCACTTGAGTTATTCCCTATAATGTTAGGAGAAGGAGTCAAACCTGATGAGTATTGTATTAGTAGTGTGTTAAGTATTATNAGTTGCTTAAACCTAGGGTCACAGGTGCATGGTTACATCTTGAAGTCTGGATTAGTCACTGATGCTTCTGTAGGATGTTCACTTTTTACAATGTACTCAAAATGTGGTTGTTTAGAGGAATCTTACAAAGTTTTTCAGCAAGTTGTTATCAAAGATAATGTCTCATGGGCCTCCATGATTTCTGGTTTTGCAGAGCATGGATATCCAGATCGAGCTCTTCAACTATTTAAAGAAATGCTATGTCAAGAAATTGTACCCGATCACATTACGTTAATCTCAACTCTAACTGCATGTTCTGATCTTTGTTTCTTGCGAACAGGTAAAGNAATTCATGGTTATGCATTTTGTTTAGGACTAGGAACAAACACAGCTGTTGGTGGTGCACTTGTAAACATGTATTCTAAGTGTGGAAGCTTGATNTTGGCAAGGATGGTGTTTGATATGATGCCCCATAAAGATCCGTTTGCTTGCTCTTCATTGGTCTCAGGATATGCCCAAAAGGATTTAATTGAAGAGTCATTTTTGTTATTCCATGATATGCTCCTAAATGATGTCATAATTGATGCCTTCACAATTTCATCCATTCTTGGGGCTGCTGCACTTTCATATCGGTCAGACATTGGAACTCAATTGCATGCCTACNTTGAAAAGTTAGGATTACAAGCCAATGTATCTGTTAGTAGTTCGCTAGTGACAATGTACTCAAAATGTGGAAGTATTCAGGATTGNCGTAAAGCATTTGATGATGCTGAGAAGCCTGACCTTGTAGGTTGGACATCCATCATAGTGAGCTATGCTCAACATGGTAAAGGTGCAGATGCCTTAGCTGCATATGAACTTATGAGAAAAGAAGGAGTGCGACCTGATGCTGTAACTTTTGTTGGGATTCTATTGGCTTGTAGTCATAGTGGGCTGGTTGAAGAAGCCTTCTTCTATCTTAATTCAATGATCAAAGACTGCAACATTACACCAAGTCATCGACATTATGCTTGTATTGTTGACCTTCTTGGTCGATCAGGTAGACTGAGAGAGGCTGAAAGTTTCATTAACAACATGCCTTTTGAGCCTGATGCTTTAATATGGGGAACTTTGCTTNCTGCTTGTAAGGTCCATGGTGATTTTGAGCTTGGCAAGTTAGCAGCCAAAAAGGTATTGGAGTTGGGGCCAAGTGATGCTAGTGCTTATGTGTCCTTTTCAAACATCTGTGCAGATGGAGGACGGTGGGAAGAAGTCACGAAGATTAGAAGCTTATTGAACAAAACTGGGATGAAGAAAGAGCCTGGTTGGAGCCTTTTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01199	39934	42738	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001199s00031519.1	PF01535.15	PPR	125	147	0.59
Glyur001199s00031519.1	PF13041.1	PPR_2	152	199	4.70E-09
Glyur001199s00031519.1	PF13041.1	PPR_2	254	301	1.60E-08
Glyur001199s00031519.1	PF01535.15	PPR	328	353	0.81
Glyur001199s00031519.1	PF13041.1	PPR_2	354	402	6.00E-12
Glyur001199s00031519.1	PF01535.15	PPR	459	488	0.096
Glyur001199s00031519.1	PF13041.1	PPR_2	553	600	9.70E-08
Glyur001199s00031519.1	PF01535.15	PPR	630	652	0.8
Glyur001199s00031519.1	PF01535.15	PPR	658	685	0.0097
Glyur001199s00031519.1	PF01535.15	PPR	760	788	0.0019
Glyur001199s00031519.1	PF13812.1	PPR_3	793	826	0.26
Glyur001199s00031519.1	PF01535.15	PPR	831	854	1.1

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.237
SRR1783600	control	3.218
SRR1783602	moderate drought stress	3.591
SRR1811619	moderate drought stress	3.548

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.086
DRR006520	Root Summer glycyrrhizin high producing strain	1.975
DRR006521	Root Winter glycyrrhizin high producing strain	3.472
DRR006522	Root Winter glycyrrhizin high producing strain	3.280
DRR006523	Root Summer glycyrrhizin low producing strain	3.346
DRR006524	Root Summer glycyrrhizin low producing strain	3.271
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.262
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.267

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.581
SRR2868004	Drought Stress (root)	10.251
SRR2967015	Control (root)	9.880

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.677
SRR9715740	Leaf	2.840
SRR9715741	Leaf	4.372
SRR9715739	Root	0.317
SRR9715742	Root	2.673
SRR9715743	Root	2.637

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.527
SRR8749028	MeJA induced 9h	2.928
SRR8749029	MeJA induced 9h	1.426
SRR8749030	Uninduced	0.841
SRR8749031	Uninduced	1.063
SRR8749032	Uninduced	0.710

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.407
SRR8400027	Control - Root	7.154