Gene detail information of Glyur001198s00038327 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53870.1 | 8.00E-33 | early nodulin-like protein 1 |
| NR | KEH38716.1 | 3.16E-69 | MATE subfamily protein [Medicago truncatula] |
| Swissprot | tr|Q9T076|ENL2_ARATH | 7.00E-41 | Early nodulin-like protein 2 (Precursor) |
| trEMBL | tr|A0A072VAS3|A0A072VAS3_MEDTR | 1.00E-69 | MATE efflux family protein {ECO:0000256|RuleBase:RU004914} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01198 | 36065 | 38146 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001198s00038327.1 | PF02298.12 | Cu_bind_like | 33 | 117 | 9.40E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.104 |
| SRR1783600 | control | 0.105 |
| SRR1783602 | moderate drought stress | 0.054 |
| SRR1811619 | moderate drought stress | 0.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.079 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.077 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.080 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 461.280 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 461.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.916 |
| SRR2868004 | Drought Stress (root) | 0.195 |
| SRR2967015 | Control (root) | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.581 |
| SRR8400027 | Control - Root | 0.018 |