Gene detail

Gene detail information of Glyur001197s00032691

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G33406.1	1.00E-22	hAT dimerisation domain-containing protein / transposase-related
NR	XP_006579099.1	0	PREDICTED: uncharacterized protein LOC102660479 [Glycine max]
trEMBL	tr\|B9G0A3\|B9G0A3_ORYSJ	5.00E-159	Putative uncharacterized protein {ECO:0000313\|EMBL:EEE68470.1}

Sequence

Transcript Sequence

>Glyur001197s00032691.1
ATGTTTTATTCAGCTGGCTTATCATTCCATCTTGCTAGGAATCCTTACTTTGTTAGTTCCTATTCATTTGCTGCTAACCACAATCTTAGTGGTTTCCTTCCCCCCANTTATAATGCTTTGAGAACTAGTCTTTTACAGCAAGAGAGGTCTCATATTGAAAGACTGCTTCAACCTATCAAGTCTTTATGGACAGTGAAAGGGGTTACATTGGTCACTGATGGATGGACAGATGTACAAAGCAGGCCTCTGATAAATTTCATGGCGTGTCATTGGATCACTGAAGTAGTTGATGATGCATCTTTTGTGAAAATTTTCATAATGACGCATTCAATGAGATTGGCCATTTTCAATGAGTTTTCAACTCTTAAGTTNCTTTCTATTGCTGCAACTCATTTTGCATCAATGATAGTGATGCTAAAAAGATTCAAGTCGCTGAAACGTGCTTTGCAGAATATGGTCATTAGTGATCAATGGAATGCTTATAGAGAAGATGATGTTAGGAAAGNTGCACGTGTGAAGGAACTTATTATAAATGATTTGTGGTGGGATAAAATAGACTACATTNTTTCTTTCACNGACCCCANATACAACATGATTAGAATATGTGANACAGATGTTTCTACTCTTCATTTGGTGTATGAAATGTGGGATTCTATGATAGAAAAAGTGAAGGCAACCATATATAGTCATGAGGAAAAGGAAGCAACTGAGATATCCAATTTCTTTGATGTTGTTCATAATATACTCAATCTTAGGTGGAGCAAGAGTTGTACTCCACTTCATTGCTTGGCCCATTCATTGAATCCAAGGTATTATAGTGAAGAGTGGCTTAGGGAATCTTCAAATAGAGTTCCTCCTCATCAAGATGATGNAGTTTCTAGAGAGAGGAACAAATGTCTAAAGAGATNTTTTCAAAATGCTGAGGAGAGNAAAAAAGTTTATGTAGAATTTGCCAATTTCTCATCTTGTGCTGGTNATTTTGCTTCTTTTGATTCAATTNAAGATAGATGGACATTGGATCCAAAATCTTGGTGGGTGATGCATGGNTCTTCAACNCCTTTACTCCAAAAANTTGCCTTGAAACTTCTTGTGCAACCTTGTTCTTCCTCGTGTAGTGAGAGGAATTGGAGTNCATACTCTTTTATTCATTCTTTGAAGAGAAACAAAATGGATCCAAAAAGGGCAAAGGATTTGGTTTATGTGCATTCTAATCTTCGACTTTTATCTAGGAAAGATGAAGGATATGCTAAAGGAGAGACAAGGATGTGGGATGTTAGTGGAGATGTACATGATGCACTTGATGGTACTGCTAGTCTTCTTGAATCAGCAGAGTTGTCTCTTGATGAACCAGAGTTAGAAGCTATGTTATTTCTTGATGATTGGAATGGAGGAGAAGAGAATGATACAGTTAGTGTTAGACAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01197	29169	30965	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001197s00032691.1	PF04937.10	DUF659	35	88	6.60E-13
Glyur001197s00032691.1	PF05699.9	Dimer_Tnp_hAT	332	405	9.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.664
SRR1783600	control	0.462
SRR1783602	moderate drought stress	0.596
SRR1811619	moderate drought stress	0.739

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.329
DRR006520	Root Summer glycyrrhizin high producing strain	1.242
DRR006521	Root Winter glycyrrhizin high producing strain	1.511
DRR006522	Root Winter glycyrrhizin high producing strain	1.240
DRR006523	Root Summer glycyrrhizin low producing strain	0.438
DRR006524	Root Summer glycyrrhizin low producing strain	0.790
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.515
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.518

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.176
SRR2868004	Drought Stress (root)	0.295
SRR2967015	Control (root)	0.340

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.228
SRR9715740	Leaf	0.389
SRR9715741	Leaf	0.219
SRR9715739	Root	0.033
SRR9715742	Root	0.109
SRR9715743	Root	0.169

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.039
SRR8749028	MeJA induced 9h	0.272
SRR8749029	MeJA induced 9h	0.137
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.019

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.797
SRR8400027	Control - Root	6.128