Gene detail information of Glyur001196s00027116 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13350.1 | 1.00E-04 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain |
| NR | KHN01511.1 | 4.10E-08 | High mobility group B protein 10 [Glycine soja] |
| trEMBL | tr|I1JVN1|I1JVN1_SOYBN | 1.00E-08 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G12530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01196 | 73656 | 74328 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.966 |
| SRR1783600 | control | 5.798 |
| SRR1783602 | moderate drought stress | 5.953 |
| SRR1811619 | moderate drought stress | 6.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.328 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.448 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.323 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.646 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.341 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.948 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.245 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.441 |
| SRR2868004 | Drought Stress (root) | 2.537 |
| SRR2967015 | Control (root) | 2.685 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.137 |
| SRR9715740 | Leaf | 4.405 |
| SRR9715741 | Leaf | 4.390 |
| SRR9715739 | Root | 0.709 |
| SRR9715742 | Root | 1.555 |
| SRR9715743 | Root | 1.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.469 |
| SRR8749028 | MeJA induced 9h | 2.577 |
| SRR8749029 | MeJA induced 9h | 2.415 |
| SRR8749030 | Uninduced | 1.483 |
| SRR8749031 | Uninduced | 1.675 |
| SRR8749032 | Uninduced | 1.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.277 |
| SRR8400027 | Control - Root | 5.285 |