Gene detail

Gene detail information of Glyur001194s00035334

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02500.1	4.00E-167	heat shock cognate protein 70-1
NR	XP_003622001.1	0	Heat shock protein [Medicago truncatula]
COG	YP_003914167.1	1.00E-122	chaperone protein DnaK [Ferrimonas balearica DSM 9799]
Swissprot	tr\|P09189\|HSP7C_PETHY	0	Heat shock cognate 70 kDa protein
trEMBL	tr\|G7KZZ9\|G7KZZ9_MEDTR	0	Heat shock cognate 70 kDa protein {ECO:0000313\|EMBL:AES78219.1}

Sequence

Transcript Sequence

>Glyur001194s00035334.1
ATGCATCCATTTCGTACGGATCGAGATCGTGTTCCTGAACAAAACAATAGAGCAGAGATCATCCACAATGAACAAGGCAACAGAACCACTCCTTCCTTTGTTGCTTTCACCGACTCTCAAAGGCTTATTGGTGATGCTGCCAAAAATCAAGCTGCTTCTAACCCACTAAACACCGTCTTTGATGCAAAGAGATTAATTGGAAGGAAGTATAGTGATTCTGTTGTTCAGAATGATCTTCAGTTGTGGCCCTTTAAGGTCATTGCTAGTGATGATGACAGACCCATGATCGTTGTTAAGTACAAGGACACGGAAAAGCACTTCGCTGCTGAGGAAATATCATCCATGAATGCAGTTGTGACTGTGCCTGCTTATTTCAATGATTCTCAGCGGAAAGCCACCAAAGATGCTGGTGTTATTGCTGGTCTCGACGTAATGCGCATAATCAATGAACCAACTGCAGCTGCTCTTGCATATGGCTTACAAAAAAGAGCTAATTGTGTTGAGAAGAGAAATGTTTTCATCTTTGATCTTGGTGGTGGAACTTTTGATGTGTCTCTCCTAACAATTAAAAATAATGACTTTAAAGTTATGGCCACTGCCGGAGACACTCACCTCGGGGGAGAGGACTTTGACAACAGAATGGTGAACCACTTAGTGAAGGAGTTCAAGAGGAAGCACAAAATGGACATTAGTGGCAACTCAAAAGCTCTAAGGAGGTTGAGAACTGCTTGTGAGAGAGCAAAGAGGACCCTTTCATTCGATACTGTGGCCACAGTTGAGATAGATGCTATCTTTCAGGATGCTAAGATGGACAAGAGTAGTGTAGATGACGTTGTCCTTGTTGGTGGGTCTTCTAGGATTCCCAAAGTGCAGCAGCTATTGCAGGACTTCTTCAATGGGAAGGATTTGTTTGAGAGCATCAACCCTGATGAGGCTATTGCTTATGGTGCAGCTGTTCAGGCTGCTTTGCTTTGTGAAGGCTTTGAGAATGTTCCAAACTTGGTGCTATTAGATGTTACACCGTTGTCTCTTGGTACATCAGTAAAAGGAGATCGCATGAGTGTGGGTGAAAGAAGCAGAGCCAGTGATAATAACTTGCTGGGGATGTTTAATCTCCCAATCCCTCCGGCTCCTCGAGGTTTTCCTATCAAAGTATGTTTTGCTATAGATGCGGATGGTATATTAAAAGTCTCTGCACGGGAAGAAACCAGGGGTATTGAGAGAGATATCACAATAACAAATGAAAATGGAAGGCTGTCAAGGGAAGAAATTGAGAGGATGACACGAGATGCTGAGAATTTTAGGTCCGAAGATATTAAGTTCAAGAAAAAAGCTAAGGCAATAAATGATTTGGATGATTATCTTTACAATGTGAGGAAAGGCAAATATTTGCTTGATGGTGGCCAACGGGAAGAAACACATGATGTGTTTGAGGACTTTCTAAAGGAGCTTGTGAGTATCTTTGAATCCACTTTGAACAAAGCCAACAATGGTTTGTTCGATGAGGAAAGTGACTCGGATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01194	17347	19789	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001194s00035334.1	PF00012.15	HSP70	14	264	1.00E-103
Glyur001194s00035334.1	PF00012.15	HSP70	355	462	6.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.122
SRR1783600	control	5.978
SRR1783602	moderate drought stress	4.461
SRR1811619	moderate drought stress	4.215

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.666
DRR006520	Root Summer glycyrrhizin high producing strain	12.355
DRR006521	Root Winter glycyrrhizin high producing strain	0.081
DRR006522	Root Winter glycyrrhizin high producing strain	0.080
DRR006523	Root Summer glycyrrhizin low producing strain	15.763
DRR006524	Root Summer glycyrrhizin low producing strain	17.602
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.736
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.845

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.489
SRR2868004	Drought Stress (root)	1.620
SRR2967015	Control (root)	1.809

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.303
SRR9715740	Leaf	0.283
SRR9715741	Leaf	1.052
SRR9715739	Root	0.597
SRR9715742	Root	15.870
SRR9715743	Root	11.154

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.082
SRR8749028	MeJA induced 9h	1.328
SRR8749029	MeJA induced 9h	3.773
SRR8749030	Uninduced	3.027
SRR8749031	Uninduced	4.821
SRR8749032	Uninduced	2.868

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.590
SRR8400027	Control - Root	1.666