Gene detail information of Glyur001192s00036935 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29500.1 | 1.00E-27 | HSP20-like chaperones superfamily protein |
| NR | AFK35224.1 | 1.09E-73 | unknown [Medicago truncatula] |
| COG | YP_001997882.1 | 2.00E-16 | heat shock protein Hsp20 [Chlorobaculum parvum NCIB 8327] |
| Swissprot | tr|P27879|HSP11_MEDSA | 3.00E-42 | 18.1 kDa class I heat shock protein (Fragment) |
| trEMBL | tr|I3S4N2|I3S4N2_MEDTR | 4.00E-74 | Uncharacterized protein {ECO:0000313|EMBL:AFK35224.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01192 | 45500 | 46009 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001192s00036935.1 | PF00011.16 | HSP20 | 63 | 167 | 2.60E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 64.647 |
| SRR1783600 | control | 64.016 |
| SRR1783602 | moderate drought stress | 113.057 |
| SRR1811619 | moderate drought stress | 111.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 169.325 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 168.056 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.714 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.231 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 237.199 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 234.892 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 86.228 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 86.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.234 |
| SRR2868004 | Drought Stress (root) | 67.069 |
| SRR2967015 | Control (root) | 92.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 71.822 |
| SRR9715740 | Leaf | 92.232 |
| SRR9715741 | Leaf | 72.828 |
| SRR9715739 | Root | 69.528 |
| SRR9715742 | Root | 196.948 |
| SRR9715743 | Root | 169.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.613 |
| SRR8749028 | MeJA induced 9h | 0.505 |
| SRR8749029 | MeJA induced 9h | 0.115 |
| SRR8749030 | Uninduced | 0.256 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 65.072 |
| SRR8400027 | Control - Root | 66.094 |