Gene detail information of Glyur001192s00036933 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26975.1 | 9.00E-16 | Ctr copper transporter family |
| NR | XP_004492383.1 | 1.14E-56 | PREDICTED: copper transporter 6-like [Cicer arietinum] |
| Swissprot | tr|Q8GWP3|COPT6_ARATH | 1.00E-30 | Copper transporter 6 |
| trEMBL | tr|V7B3N9|V7B3N9_PHAVU | 1.00E-56 | Uncharacterized protein {ECO:0000313|EMBL:ESW12444.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01192 | 29592 | 30062 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001192s00036933.1 | PF04145.10 | Ctr | 20 | 63 | 1.00E-11 |
| Glyur001192s00036933.1 | PF04145.10 | Ctr | 77 | 120 | 1.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 87.128 |
| SRR1783600 | control | 86.592 |
| SRR1783602 | moderate drought stress | 71.977 |
| SRR1811619 | moderate drought stress | 71.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 42.479 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.252 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.652 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.259 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 37.219 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.586 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 56.464 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 52.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.782 |
| SRR2868004 | Drought Stress (root) | 27.905 |
| SRR2967015 | Control (root) | 16.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 158.843 |
| SRR9715740 | Leaf | 274.438 |
| SRR9715741 | Leaf | 171.362 |
| SRR9715739 | Root | 49.267 |
| SRR9715742 | Root | 18.092 |
| SRR9715743 | Root | 25.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.458 |
| SRR8749028 | MeJA induced 9h | 0.113 |
| SRR8749029 | MeJA induced 9h | 0.065 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.165 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 62.429 |
| SRR8400027 | Control - Root | 43.386 |