Gene detail

Gene detail information of Glyur001191s00034542.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	ATCG00120.1	ATP synthase subunit alpha
NR	YP_009027279.1	ATP synthase CF1 alpha subunit (chloroplast) [Glycyrrhiza glabra]
COG	YP_007142336.1	ATP synthase F1 subcomplex subunit alpha [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q2PMS8\|ATPA_SOYBN	ATP synthase subunit alpha, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_01346}
trEMBL	tr\|A0A023I6Y2\|A0A023I6Y2_GLYGL	ATP synthase subunit alpha, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_01346, ECO:0000256\|RuleBase:RU004286}

Sequence

Transcript Sequence

>Glyur001191s00034542.1
GCTTGAAGTTTAGACGCAGTGTCGTACTCTTTCTACCACTATGTTAATACGGAAATGGTTTCAAAAAATGGAATTGTTGGAATTTTTTCGATATAGAACACTCATGTCGATAAAATCGCTTGAATTCTCTCTTTTATAGAATGCGGAATCGATGACCTACGTATAAATTAATAAGAATTCTTTGGACTTGAAGAAAAAAAAACAACTTTGCTGACAATTATTTGTTTGGTCAGAAGAGTCCTCTAAATATTTTCAATATTTTTCACAAGATTTTTCTATCTTTTTAGAAATTGAAATAGAGAAAAGAGGATAGACTCATTACATAATAAAGATAGGGAAATTTCCTATAAGGAATTGAGTGTGAGAGCCAAATGAATTGAAAGATTCATGTTTGGTTCGGGAAGAGATCATAGACATTTTAAAATGAATGGAAAGAGAATCTACTTTCATTAAGTGATTTATTAGATAATCGAAAACAGAGAATCTTGAGAACTATTCGAAATTCAGAAGAACTACGGGAAGGTGCCATTGAACAGCTGGAAAAAGCCCGGGCCCGCTTAAAGAAAGTAGAAAAGGAAGCAGATCAGTTTCGAGTGAATGGTTATTCTGAGATAGAACGAGAAAAATTGAATTTAATTAATTCAATTTATACAACTTTGGAACAATTAGAAAATTACAAAAATGAAACCATCAATTTTGAACAACAAAGGGCTATTAATCAAGTCCAACAGCGGGTTTTACAACAAGCCTTACAGGGAGCTTTAGGAACTCTGAATAGTTGCTTAAACAACGAGTTACATTTACGTACCATCGGTGCTCATATTGGTATGTTTGGGGCGATGAAAGAAAAAAATAACTGATTAGTCCTTCTACTATAGTATAGAGTATAGGCATAATTTTTTCTTCTTAAAAAGAATCAAATTAAGAAATATTCATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTCAAAATTGTAAATACAGGTACCGTACTTCAAGTCGGCGATGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCGGGTGAATTAGTGGAATTTGAAGAGGGTACTATAGGCATTGCTTTGAATTTGGAATCAAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGATGATACAAGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCCGTAAGTGAGGCTTATTTGGGTCGTGTTATAAATGCCCTGGCTAAACCTATTGACGGTCGAGGAGAAATTCCAGCTTCGGAATCTCGGTTAATCGAATCTCCCGCTCCCGGTATTATTTCGAGACGTTCCGTGTATGAGCCTCTTCAAACGGGACTTATTGCTATTGATTCCATGATCCCTATAGGACGTGGCCAGCGAGAATTAATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCCACAGATACGATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTAACTACTTTACAAGAAAGAGGAGCAATGGAATACACTATTATAGTGGCTGAAACAGCAAATTCTCCAGCTACATTACAATATCTCGCCCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTATCGTGAACGCCACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCTTATCCCGGAGATGTTTTTTATTTGCATTCGCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGGGATGTTTCAGCTTATATTCCTACTAATGTCATTTCTATTACGGATGGCCAAATATTTTTATCCGCCGATCTATTCAATGCTGGAATCAGGCCTGCAATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCTGCTGCTCAAATTAAAGCCATGAAACAAAAGCCGGATTCCAAGACTGATGAAGAATGGGATTTTGAGCATCAACAGGTTTGTGCTTTTATTCGGCAATTTGTTGAAGATAATATTTACAATCATATTGCTAATGAGACAGATGCAAAATCTTTGTGGGAGAAGATAGAGTCCTTGTATGCGGCTAAATCAAGGAACAATAAATTGTTTCTGCTGAATAGTTTTATCAACTTGAGGTACAAGGATGAGACTTCTATTTCAGATCACTTGAATGAATTTCAAGGGCTCCTTGATCAGATGTCAGGAATGGGTATCAAGGTTGATGATGAGCTTTTGGGACTATTGCTACTGTTATCTTTACCTGAGTCTTGGGAGACATTCCAGGTTTCTATTACTAGTTCAGCCCCTAATGGTGCTATCTCTTTGCAAACGGCAAAGAGTAATGCTCTTAATGAGGAGATGATAGGGAAGGCACAGGGGCCATTTACCGACGGCCCCGAGGCCGACGGTAATCTCGGGGATACCGACGGCCAAACCGACGCTAAGTCGTCGGTAGTGCGACGGCTTAGCCGTCGGAAATTCAAATTAAATATTACCGACGGCTTGGCCGTTGCCACCACTTTGAGCCACCACCGCCCTCGTCGCCACCATCCAGGGCCCCCACTGTCACCACAGGTACAGTGCGCCGCCACCGCCGCCGTGAACCACCACACCACAGCCCCTCTCTCCTCGGTAAACACCGACGGCTTTGTAAGCGTCGGTAAATATTACGACAACCTATTTCCAGACAGTCCAGTGGCCGTCGATAAGCCGGGGAGAAGTCAGAAAAAAGAACCGAAGGGTGGTAGAGAGAAGAGCATAAGTAAGTCCAAATCAAGATACAAGAATGTGGAGTTCCATTATTGTCACAAAACAAGGCACATACAGAAGAATTGTTTTCAGTGGAAAAAGGAGAACAAAGGCAAGAAGGGTAAGCAGAAAGAGAGAGATCATGATGATTATGACTGTGTCACTACTGCTACTAGTGATGATATTGTTATTCTCCCTGACCATGAGTCTGTTAATCTTGTATCAGATGAGAGCATGTGGATAATTAATAGTGGTGCTACACTGCATGTTACATCGAGGAAGGAGTTCTTCACCTCTTACACTTCGGGTGACTTTGGAGTGCTGAAGATAGGTAATGAGGGTGTGTCCAAGGTGATTGGTGTTGGTGATGTTTGCCTGCAGACCAACATTGGAATGCAGTTGTTGCTTAGAGAAGTCAAACATGCTCCAGATGTTCGCTTTAATTTGATTTCTGTGCAGACTAAGAACGGGATAACTGAGAGAACAGGTGAATGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01191	7127	21118	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02111	ATPF1A, atpA	EC:3.6.3.14	Oxidative phosphorylation	map00190
			Photosynthesis	map00195

Gene Ontology

biological_process

GO:0015986 ATP synthesis coupled proton transport

GO:0015992 proton transport

GO:0046034 ATP metabolic process

cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)

molecular_function

GO:0005524 ATP binding

GO:0046933 proton-transporting ATP synthase activity, rotational mechanism

GO:0046961 proton-transporting ATPase activity, rotational mechanism

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001191s00034542.1	PF02874.18	ATP-synt_ab_N	28	93	4.00E-17
Glyur001191s00034542.1	PF00006.20	ATP-synt_ab	149	365	5.20E-74
Glyur001191s00034542.1	PF14227.1	UBN2_2	414	522	5.50E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.095
SRR1783600	control	27.154
SRR1783602	moderate drought stress	23.762
SRR1811619	moderate drought stress	23.989

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.378
DRR006520	Root Summer glycyrrhizin high producing strain	37.738
DRR006521	Root Winter glycyrrhizin high producing strain	21.521
DRR006522	Root Winter glycyrrhizin high producing strain	20.456
DRR006523	Root Summer glycyrrhizin low producing strain	32.076
DRR006524	Root Summer glycyrrhizin low producing strain	32.737
DRR006525	Leaf Summer glycyrrhizin high producing strain	227.392
DRR006526	Leaf Summer glycyrrhizin high producing strain	227.906

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.609
SRR2868004	Drought Stress (root)	1.123
SRR2967015	Control (root)	0.887

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.270
SRR9715740	Leaf	12.620
SRR9715741	Leaf	21.486
SRR9715739	Root	43.322
SRR9715742	Root	5.709
SRR9715743	Root	12.789

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.983
SRR8749028	MeJA induced 9h	1.771
SRR8749029	MeJA induced 9h	1.040
SRR8749030	Uninduced	0.910
SRR8749031	Uninduced	0.508
SRR8749032	Uninduced	1.014

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.383
SRR8400027	Control - Root	0.323