Gene detail information of Glyur001189s00033632 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36930.2 | 1.00E-40 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | KEH19903.1 | 5.79E-116 | disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 6.00E-47 | TMV resistance protein N |
| trEMBL | tr|A0A072TSV3|A0A072TSV3_MEDTR | 2.00E-116 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:KEH19903.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01189 | 37359 | 43013 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001189s00033632.1 | PF01582.15 | TIR | 10 | 141 | 2.80E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.057 |
| SRR1783600 | control | 0.100 |
| SRR1783602 | moderate drought stress | 0.111 |
| SRR1811619 | moderate drought stress | 0.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.274 |
| SRR2868004 | Drought Stress (root) | 12.617 |
| SRR2967015 | Control (root) | 10.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.320 |
| SRR9715740 | Leaf | 0.173 |
| SRR9715741 | Leaf | 2.113 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.396 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.909 |
| SRR8749028 | MeJA induced 9h | 15.632 |
| SRR8749029 | MeJA induced 9h | 14.970 |
| SRR8749030 | Uninduced | 12.038 |
| SRR8749031 | Uninduced | 9.252 |
| SRR8749032 | Uninduced | 9.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.513 |
| SRR8400027 | Control - Root | 6.933 |