Gene detail

Gene detail information of Glyur001189s00033629

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17010.1	3.00E-87	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003556637.1	0	PREDICTED: protein SRG1-like [Glycine max]
COG	YP_006370287.1	2.00E-24	putative iron/ascorbate oxidoreductase [Tistrella mobilis KA081020-065]
Swissprot	tr\|D4N502\|DIOX3_PAPSO	7.00E-104	Codeine O-demethylase
trEMBL	tr\|I1ND44\|I1ND44_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G01370.1}

Sequence

Transcript Sequence

>Glyur001189s00033629.1
ATGAGCCTTGGGATTTGTGGAGTAGTTATGGAACCAGAAACAGCAGAGCTTGAAGGTGTGAAAGAACTAGCAAAGGAAGGACTAACCAGAATTCCAGATAGATATGTTCGTTCAGATATTGACCCTCCAATTGTATCTAGCACAGACACTTCAGCGCCACAGATCCNTGTGATCGACCTAAACAAGTTGTTGTCTGAAGAAGTGAAGGGTCCTGAAATGGAGAAACTTGACCTTGCATGCAAAGAATGGGGTTTCTTCCAGGTTTGCATCTACATCTCCCACCTTCTCTTTTCTATTTTGTTATTTGATCTCCGGGTTCTTCTTACCCTTCGTTTCAATTATTTGTTAAAACTGATTNACCACGGATTTAGCAACGGATTAGTGGAAGATGTGAAGACGGGTGCTAAAAAACTCTTCAATCTTTCAATGGAAGAGAAGAGTAAGCTTTGGCAAAAACCAGGAGACATGGAAGGGTTTGGTAAAATGGTTGATGAGCCTAAAGAGGAACCATCAGATTGGGTAGATTCGTTCTACATTTTCACGCTTCCGTCCCACTTAAGGAAGCCCCATCTGTTCCCTAATTTACCACTGCCATTCAGGGAAAATTTAGATGCTTATTGTGTAAAGATTAGAGACCTTGCCATCGACATTTTTGNTCTTATAGGGAAAGCTGTGGGCATAGAACCAAAGGATATTAAAGAGTCATTAGGAGAAGGAGGCCAATCAATAAGGATCAACTACTATCCTCCTTGTCCTCAACCAGAAAATGTCCTCGGCCTGAAGGCTCATACCGACGGGTCTGCCCTCACAATCCTTCTCCAAACCAATGAAGTTGATGGCCTCCAAATAAGAAAAGATGGAGCATGGATTCTTGTTAAGCCCCTCCCAAATGCTTTCATCATTAGTCTCGGAGATGTTATGGAGGTAATGACAAATGGGATATACAAGAGTACTACACATCGAGCTATAGTAAACTCACAAAAAGAAAGGCTTTCTATAGCTACATTTTATGGCCCAGAATGGTGTGGAAATATTGGTCCAGCACAANCTCTTATTACTCGAGAAACACCAGCATTGTTCAAAACAATTGGTGTAGCAGATTTCTACAAGGGATACGTTTCATCCGAACATCATGGGAAATCATACATAAATGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01189	12811	24113	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001189s00033629.1	PF14226.1	DIOX_N	117	193	2.50E-10
Glyur001189s00033629.1	PF03171.15	2OG-FeII_Oxy	241	339	1.10E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.756
SRR2868004	Drought Stress (root)	6.712
SRR2967015	Control (root)	5.772

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.988
SRR8749028	MeJA induced 9h	0.768
SRR8749029	MeJA induced 9h	10.095
SRR8749030	Uninduced	1.313
SRR8749031	Uninduced	2.200
SRR8749032	Uninduced	0.867

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.953
SRR8400027	Control - Root	0.557