Gene detail information of Glyur001188s00036035 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45080.1 | 3.00E-48 | cyclin p3;1 |
| NR | XP_004514236.1 | 1.83E-87 | PREDICTED: cyclin-U2-2-like [Cicer arietinum] |
| Swissprot | tr|Q9SHD3|CCU21_ARATH | 3.00E-71 | Cyclin-U2-1 |
| trEMBL | tr|V7B5F8|V7B5F8_PHAVU | 1.00E-87 | Uncharacterized protein {ECO:0000313|EMBL:ESW12805.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01188 | 57254 | 58905 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001188s00036035.1 | PF08613.6 | Cyclin | 98 | 129 | 1.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.585 |
| SRR1783600 | control | 4.961 |
| SRR1783602 | moderate drought stress | 5.273 |
| SRR1811619 | moderate drought stress | 5.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.841 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.440 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.240 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.234 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.894 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.296 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.282 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.397 |
| SRR2868004 | Drought Stress (root) | 13.214 |
| SRR2967015 | Control (root) | 14.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.733 |
| SRR9715740 | Leaf | 0.913 |
| SRR9715741 | Leaf | 0.667 |
| SRR9715739 | Root | 2.867 |
| SRR9715742 | Root | 6.438 |
| SRR9715743 | Root | 3.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.125 |
| SRR8749028 | MeJA induced 9h | 0.394 |
| SRR8749029 | MeJA induced 9h | 0.450 |
| SRR8749030 | Uninduced | 0.034 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.835 |
| SRR8400027 | Control - Root | 27.637 |