Gene detail

Gene detail information of Glyur001187s00033311

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15050.1	2.00E-90	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
NR	NP_001242791.1	4.57E-160	uncharacterized protein LOC100813028 precursor [Glycine max]
trEMBL	tr\|C6TM69\|C6TM69_SOYBN	2.00E-160	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU24011.1}

Sequence

Transcript Sequence

>Glyur001187s00033311.1
TTCACAACTTCTTCACACATTCCCACACCATCAAAAAATAAAAAGAAACCAAAACACCAACCCAACCGAGGAAAATCTCAAAACCCAAACCTCAACACACACCGACAAAACAACAACAATTGTCCTTGTTGCACGATGAAAGAAACCACAGTTCCCACTCCCACCACCACAACCACCACAACTCCACCACCACAACCACCCACAACGCCAATGGCTCATAATCCCAACCCTCACAATCACAATCTCCCTCTTTTTCATCCTCATACTCTTCTTCCCCCACAGCACCACCAAATCCTCTTTTTCTTCTTCTTCTTCCTCTCCCCCTTTTTACAACCCAATTTAACCACAACCACCCATTTGGGTCTACCCAAACTACCCAGATTTGCGTACCTACTGACAGGAACAAAAGGTGAGGGCCCACAGCTAAAGAGGCTCCTTAAGGCAACGTACCACCCATGGAACTACTACCTTCTCCACCTCGATCTAGAAGCTTCCGACGCCGAGAGACTCGACCTCGCCAGGTACGTTAAGTCCGACGAGGCCGTGTTCTCGGCGTTCCGGAACGTTATGGTGGTTGGGAAGGCCGATTTGGTGACTTACAAGGGCCCCACCATGATCGCTTCCACGCTACACGGTGTTGCATTGTTGCTCAAAAGGGTCCAAGATTGGGACTGGTTTGTTAACCTCAGTGCCTCTGATTACCCTCTCATCCGGGCTTATACCATTCAAAGATATCTGGTGTTTACTATGCTAAAGAGAAAAGATCTGTCCCATCTTCGTTCAAGTTATTCACAGTTCTGTGTATTGGGTTGGGACAACCTTCCTCGCACTCTCCTCATGTACTACACAAACTTCCTTTCATCCTCAGAGGGGTACTTCCACACCGTCATTTGCAATCACAAGGACTACCAAAACACAAGCATAAACCACGATTTACGTTACATAAGGTGGGACAACCCACCAAAACAACACCCTCTCTTCTTGAAATTGGAGCATTTCGAAGACATGGTGAGCAGCGGCGCGCCTTTCGCGCGGAAGTTTGCTAAGGATGATCCGGTTCTCAACAGAATTGACAAGGAACTGTTGAGAAGACCAGAAGGTCAGTTTACACCTGGGGGTTGGTGTGTTGGCAATCCTCTTATGGGGAAAGATCCTTGTGCTGTTTTTGGAAATCCAATTGTGATTGAACCTAGTTTGAGATCAAAGAGGCTAGAAAAACTGATGGTGAAACTATTGGATTCTGAAAATTTTAGGCCAAAACAGTGTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01187	15812	21825	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT14

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0008375 acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001187s00033311.1	PF02485.16	Branch	128	247	1.40E-26
Glyur001187s00033311.1	PF02485.16	Branch	263	336	2.80E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.180
SRR1783600	control	3.781
SRR1783602	moderate drought stress	2.797
SRR1811619	moderate drought stress	2.992

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.315
DRR006520	Root Summer glycyrrhizin high producing strain	5.373
DRR006521	Root Winter glycyrrhizin high producing strain	1.647
DRR006522	Root Winter glycyrrhizin high producing strain	1.523
DRR006523	Root Summer glycyrrhizin low producing strain	3.092
DRR006524	Root Summer glycyrrhizin low producing strain	2.673
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.224
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.752

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.090
SRR2868004	Drought Stress (root)	8.385
SRR2967015	Control (root)	6.917

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.505
SRR9715740	Leaf	1.718
SRR9715741	Leaf	1.501
SRR9715739	Root	2.158
SRR9715742	Root	1.884
SRR9715743	Root	2.250

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.720
SRR8749028	MeJA induced 9h	5.327
SRR8749029	MeJA induced 9h	3.315
SRR8749030	Uninduced	4.337
SRR8749031	Uninduced	2.234
SRR8749032	Uninduced	2.755

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.609
SRR8400027	Control - Root	8.010