Gene detail information of Glyur001186s00029887 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80760.1 | 8.00E-36 | NOD26-like intrinsic protein 6;1 |
| NR | XP_003604219.1 | 1.14E-92 | Nodulin-like intrinsic protein NIP1-1 [Medicago truncatula] |
| COG | NP_866369.1 | 7.00E-10 | nodulin-26 [Rhodopirellula baltica SH 1] |
| Swissprot | tr|Q9SAI4|NIP61_ARATH | 2.00E-76 | Aquaporin NIP6-1 |
| trEMBL | tr|G7JDA2|G7JDA2_MEDTR | 4.00E-93 | Major intrinsic protein (MIP) family transporter {ECO:0000313|EMBL:AES86416.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01186 | 82318 | 84083 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001186s00029887.1 | PF00230.15 | MIP | 77 | 128 | 2.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 90.974 |
| SRR1783600 | control | 90.805 |
| SRR1783602 | moderate drought stress | 122.762 |
| SRR1811619 | moderate drought stress | 120.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.685 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.645 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.756 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.048 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.578 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 162.746 |
| SRR2868004 | Drought Stress (root) | 175.524 |
| SRR2967015 | Control (root) | 60.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.583 |
| SRR9715740 | Leaf | 4.624 |
| SRR9715741 | Leaf | 8.758 |
| SRR9715739 | Root | 51.149 |
| SRR9715742 | Root | 147.985 |
| SRR9715743 | Root | 127.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 236.393 |
| SRR8400027 | Control - Root | 278.459 |