Gene detail information of Glyur001186s00029883 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18910.1 | 3.00E-30 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_003541267.1 | 9.54E-65 | PREDICTED: uncharacterized protein LOC100793586 [Glycine max] |
| trEMBL | tr|I1LVQ2|I1LVQ2_SOYBN | 4.00E-65 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G00870.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01186 | 54512 | 57700 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 139.778 |
| SRR1783600 | control | 136.683 |
| SRR1783602 | moderate drought stress | 94.582 |
| SRR1811619 | moderate drought stress | 95.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 91.506 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 85.012 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.275 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.872 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 58.819 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 60.178 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 58.924 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 57.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.704 |
| SRR2868004 | Drought Stress (root) | 38.141 |
| SRR2967015 | Control (root) | 40.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.844 |
| SRR9715740 | Leaf | 30.598 |
| SRR9715741 | Leaf | 27.931 |
| SRR9715739 | Root | 39.120 |
| SRR9715742 | Root | 40.548 |
| SRR9715743 | Root | 36.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 56.008 |
| SRR8749028 | MeJA induced 9h | 25.588 |
| SRR8749029 | MeJA induced 9h | 32.124 |
| SRR8749030 | Uninduced | 9.894 |
| SRR8749031 | Uninduced | 4.049 |
| SRR8749032 | Uninduced | 6.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 56.031 |
| SRR8400027 | Control - Root | 57.116 |