Gene detail

Gene detail information of Glyur001186s00029880.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G18890.1	2.00E-139	Protein kinase superfamily protein
NR	XP_004507866.1	0	PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670-like [Cicer arietinum]
COG	YP_828823.1	1.00E-21	serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|Q5XF57\|Y5576_ARATH	6.00E-119	Probable receptor-like serine/threonine-protein kinase At5g57670
trEMBL	tr\|C1L342\|C1L342_MEDTR	0	Rop-interacting receptor-like cytoplasmic kinase 1 {ECO:0000313\|EMBL:CAT79815.1}

Sequence

Transcript Sequence

>Glyur001186s00029880.1
CATCTATCAGAGAACTAAGATATTCACAATGGCATGAGTCCCCTGTTTGATATATTCATTTGCGATGAGGTATATTCGAACCAACAGCTTGAAGAGACTCTTCTCCTTGAGAAGACGCGGTTTGGGGCAACAAGTTAAGGGTGAAGAAAACGATGAGAGGTTGGAGATTCTTCCATATGAAGAACCTTCTCAGAGACCCACTTGGAAATGCTTCTCTTATGAAGAGTTGTTTGATGCCACCAATGGTTTCAGCTCAGAAAATATGGTTGGAAAAGGAGGCTATGCAGAGGTTTACAAGGGAACACTGAAAGATGGTGAAGAAATTGCTGTGAAGAGACTCACAAGAACTTCGAGGGATGAAAGAAAAGAGAGAGAGTTTTTGACGGAGATTGGTACAATTGGTCATGTACGCCATTCCAATGTTTTACCTCTTCTGGGGTGTTGTATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCTCCAGAGGTTCTGTTGCATCTCTTCTCCATGATGAAAAGTTGCCTCCTGTAGANTGGAAAACAAGGCATAAAATAGCTCTTGGGACTGCACGTGGCCTTCTCTACTTGCACAAAGGATGCAAGAGGAGGATAATCCACAGGGACATCAAGGCTTCAAACATTCTATTGACAAAAGATTTTGAACCACAGATATCAGATTTTGGATTAGCAAAGTGGCTTCCATCTCAATGGACCCATCATTCAATTGCCCCAATAGAAGGGACATTTGGACATTTGGCCCCTGAATACTACTTGCATGGAGTTGTGGATGAGAAGACAGATGTCTTTGCCTTTGGTGTGTTCTTGCTAGAAGTCATCTCTGGTAGGAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCTAAACCAATTTTGAACAAGGGTGAGATAGAAGAGTTGGCAGATCCAAGGCTTGAAGGGGCTTATGATGTGACACAGTTAAAAAGGCTTGCCTTTGCTGCCTCTTTGTGCATCCGTGCATCTTCAACTTGGCGACCTACCATGAGCGAGGTACTGGAGATAATGGAGGAGGGAGAGATGGATAAAGAGAAGTGGAAAATGCCAGAGGAAGAAGAAGAAGAAGAGGAAGAGTTTTGGGGTTTTGAGGATCTGGAATATGAATATGACAGTTCCTTTTCAATGTCATTAATTGACTCCATTGAAAGCAATTAGGATAAAGGACCAGTTAGGTGCCCTTTTCATTTACCTGTGTATATATATATATATATTATATACATGTTTTTTAACAGATAAAAAGTTACTTGAGAGGAGGCTCCTCTTGTGGCTGTGCTACTCTTATCTAATCAATCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01186	35249	40706	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.10.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001186s00029880.1	PF00069.20	Pkinase	65	326	7.50E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.288
SRR1783600	control	2.333
SRR1783602	moderate drought stress	1.743
SRR1811619	moderate drought stress	2.185

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.405
DRR006520	Root Summer glycyrrhizin high producing strain	0.400
DRR006521	Root Winter glycyrrhizin high producing strain	53.257
DRR006522	Root Winter glycyrrhizin high producing strain	51.565
DRR006523	Root Summer glycyrrhizin low producing strain	2.966
DRR006524	Root Summer glycyrrhizin low producing strain	2.722
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.324
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.487

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.948
SRR2868004	Drought Stress (root)	44.055
SRR2967015	Control (root)	49.456

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.241
SRR9715740	Leaf	4.525
SRR9715741	Leaf	6.047
SRR9715739	Root	2.052
SRR9715742	Root	5.794
SRR9715743	Root	5.130

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.045
SRR8749028	MeJA induced 9h	8.382
SRR8749029	MeJA induced 9h	4.878
SRR8749030	Uninduced	16.917
SRR8749031	Uninduced	7.846
SRR8749032	Uninduced	10.543

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.644
SRR8400027	Control - Root	22.557