Gene detail information of Glyur001186s00029876 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30200.3 | 0 | vernalization5/VIN3-like |
| NR | XP_003549399.1 | 0 | PREDICTED: VIN3-like protein 2-like [Glycine max] |
| Swissprot | tr|Q9SUM4|VIL2_ARATH | 0 | VIN3-like protein 2 |
| trEMBL | tr|I1MSQ1|I1MSQ1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G07000.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01186 | 12407 | 17229 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001186s00029876.1 | PF07227.6 | DUF1423 | 152 | 285 | 3.70E-06 |
| Glyur001186s00029876.1 | PF00041.16 | fn3 | 351 | 422 | 3.60E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.581 |
| SRR1783600 | control | 22.830 |
| SRR1783602 | moderate drought stress | 16.962 |
| SRR1811619 | moderate drought stress | 17.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.939 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.651 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.307 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.854 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.042 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.547 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.930 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 73.013 |
| SRR2868004 | Drought Stress (root) | 69.154 |
| SRR2967015 | Control (root) | 66.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.246 |
| SRR9715740 | Leaf | 47.248 |
| SRR9715741 | Leaf | 34.322 |
| SRR9715739 | Root | 6.044 |
| SRR9715742 | Root | 36.146 |
| SRR9715743 | Root | 31.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.777 |
| SRR8749028 | MeJA induced 9h | 18.218 |
| SRR8749029 | MeJA induced 9h | 10.603 |
| SRR8749030 | Uninduced | 13.241 |
| SRR8749031 | Uninduced | 6.711 |
| SRR8749032 | Uninduced | 7.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.321 |
| SRR8400027 | Control - Root | 44.661 |