Gene detail

Gene detail information of Glyur001184s00030527

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38940.1	0	phosphate transporter 1;4
NR	AFU50504.1	0	phosphate transporter 5 [Astragalus sinicus]
COG	YP_004457382.1	1.00E-84	general substrate transporter [Acidianus hospitalis W1]
Swissprot	tr\|Q494P0\|PHT17_ARATH	0	Probable inorganic phosphate transporter 1-7
trEMBL	tr\|K0I855\|K0I855_ASTSI	0	Phosphate transporter 5 {ECO:0000313\|EMBL:AFU50504.1}

Sequence

Transcript Sequence

>Glyur001184s00030527.1
ATGGCAAAAGAGCAAATTCAGGTACTAAATGCGCTTGATGTGGCAAAAACACAATGGTACCACTTCACAGCAATCATCATCGCTGGAATGGGCTTCTTCACCGATGCATATGATCTATTCTGCATATCCCTTGTCACCAAGTTGCTTGGCCGCATATACTACCACGTTGATGGTGCAGCAAAGCCCGGTACATTACCTCCCAATGTATCAGCTGCTGTAAATGGGGTAGCNTTTTGTGGAACACTCTCAGGGCAGCTTTTCTTTGGCTGGCTTGGTGATAAGTTGGGTAGGAAAAAAGTCTATGGCATGACCCTAATGATGATGGTAATATGCTCCATTGGTTCTGGTCTTTCTTTCGGTCATAGTCCAAAATCTGTCATGGCAACCCTTTGCTTCTTTCGATTTTGGCTTGGNTTTGGTATTGGTGGAGACTACCCACTTTCAGCTACAATAATGTCAGAGTATTCTAATAAGAAGACTCGTGGTGCTTTCATTGCTGCAGTCTTTGCCATGCAGGGTTTTGGAATTTTAGCAGGTGGTATATTTGCAATCATAATTTCAGCTGCATTCAAGGCCAGGTTTGATTCTCCACCTTACCAGGTTGATCCAGTTGGTTCAACTGTTCCACAAGCAGACTACATTTGGAGGATAATTGTGATGGTAGGAGCACTCCCAGCTGCATTGACTTACTACTGGCGTATGAAGATGCCAGAAACTGCCCGTTACACGGCTCTAGTTGCTAAAAANACGTCGCAGGCTGCATCAGATATGTCTAAGGTTTTGCAGGTTGAGATTGAAGCTGAACCGCGGAAAGAAGAGCAGGCACAGGCTAAACAATTTGGGTTGTTCTCAAAGGAGTTCATGGGTCGCCATGGACTACATCTACTTGGTACAACAAGCACTTGGTTCTTGCTTGACATTGCATTTTATAGCCAAAATCTCTTCCAGAAGGATATCTTCAGTGCAATTGGTTGGATACCTCCTGCACAAACCATGAATGCACTTGAGGAGGTTTACAGGATTGCAAGAGCTCAAACTCTCATTGCTCTCTGCAGTACAGTTCCAGGCTACTGGTTTACAGTGGCTTTAATTGACAGAATAGGAAGATTTNCTATTCAATTGATGGGATTCTTCTTTATGACCGTCTTCATGTTTGCTCTTGCCATTCCTTATGACCACTGGACTCATAAGGAAAACCGGATAGGATTTGTGGTGATGTATTCCTTGACCTTCTTCTTTGCAAATTTTGGGCCTAANGCCACCACATTTGTTGTGCCAGCAGAGATTTTCCCTGCTAGATTCCGNTCTACTTGCCACGGAATATCATCGGCTGCAGGAAAGCTTGGCGCTATCGTTGGTGCATTTGGGTTTTTGTATTTGGCACAGAACAAGGACAAGAGCAAAGCAGATGCAGGGTACCCTGCAGGTATTGGTGTGAAGAACTCCCTCATTGTCTTGGGAGTGGTTAACATTTTGGGCTTCTTTTTTACTTTCTTGGTGCCTGAGGCAAACGGGAAATCTTTGGAGGAGATGTCAGGTGAGAATGAAGAGGAAGTTGGAACNAAAGAGTTGGAGCAATCTCATTCTCACAACAACAGAACTGTTCCTTATGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01184	35185	36801	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006817 phosphate ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005315 inorganic phosphate transmembrane transporter activity

GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001184s00030527.1	PF00083.19	Sugar_tr	26	512	3.60E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.180
SRR1783600	control	0.233
SRR1783602	moderate drought stress	0.429
SRR1811619	moderate drought stress	0.444

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.911
DRR006520	Root Summer glycyrrhizin high producing strain	0.839
DRR006521	Root Winter glycyrrhizin high producing strain	0.355
DRR006522	Root Winter glycyrrhizin high producing strain	0.303
DRR006523	Root Summer glycyrrhizin low producing strain	2.228
DRR006524	Root Summer glycyrrhizin low producing strain	2.455
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.529
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.631

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.021
SRR2868004	Drought Stress (root)	8.456
SRR2967015	Control (root)	9.889

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.983
SRR9715740	Leaf	6.630
SRR9715741	Leaf	3.868
SRR9715739	Root	3.861
SRR9715742	Root	3.527
SRR9715743	Root	2.543

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.888
SRR8749028	MeJA induced 9h	3.513
SRR8749029	MeJA induced 9h	2.681
SRR8749030	Uninduced	5.849
SRR8749031	Uninduced	2.098
SRR8749032	Uninduced	2.434

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.998
SRR8400027	Control - Root	29.425