Gene detail

Gene detail information of Glyur001184s00030526

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G31200.1	2.00E-55	actin depolymerizing factor 6
NR	NP_001239657.1	1.89E-95	uncharacterized protein LOC100819975 [Glycine max]
Swissprot	tr\|Q8SAG3\|ADF_VITVI	5.00E-83	Actin-depolymerizing factor
trEMBL	tr\|C6TC79\|C6TC79_SOYBN	7.00E-96	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G31960.1}

Sequence

Transcript Sequence

>Glyur001184s00030526.1
ATGCGTGCGTTTGAATTCCAGCCAAATGCCTCATCNGGCATGGGTGTTGCTGAGCACAGCAAAAACACCTTCATGGAATTGAAGCAGAAGAAGGTCCATCGTTATGTGATCTTTAAGGTTGATGAAAAGAAGAGGGAGGTTGTGGTTGAGAAGACTGGTGGCCCTGCTGAGAGCTATGACGANTTCACTGCATCTTTGCCTGAGAATGATTGCAGATATGCTGTGTTTGACTTCGATTTTGTCACTTCTGAGAACTGTCAAAAGAGCAAAATCTTCTTCATTGCATGGTCTCCTTCAACATCTCGAATCCGTGCCAAGATGCTCTATGCCACAACTAAAGACAGGTTTAGACGTGAGCTAGATGGTGTCCATTATGAAATCCAGGCTACTGACCCCACAGAAATGGATCTTGAAGTGATCAGGGACCGAGCACATTGAGATGTTTATGCAGTTATTCATTTCNTCATTAAAATCTACTAGGTTGTACTTTTAATGAATTACCTCTACTTGGTTTTATCCTCTGCAGAGCCCATCTTGCTACAAAAAATATANCTCCAAATAATATGAATCTGAAGACTGATGGGATTAAGCTTTAAGCAGCTACTGTTGTAAATTCCAGTTTGCTTGACTGTATTGTATGAGCATGACTCTATGGAACCACATGTCTTAGATATTAAAATCCCTTGTCATAACTTCGACAAGGTATCCATACAAATTTTCAAAACTTGCTTTTATCAATTGTTGCTTTTGAAAGCCAACTTATCATGATTCCTTCATGAGTACTTGATTGTGGCAAAGAACAGGCAGAGAACGGTAACCAACTAATGATGAACCTATCATAGCAGACTATAGAGCAAAGTACAACAGTCATCGGTAGTATAAAAATCACAGGTTCTTGCGCATGCTCTTTCTAAACAAGGCAAAAAGAAAATGAAGATCCTGTGTGGCAAAATAGTCAAATAAAGGGATGGAATCTTGTGTGCTTATGTTTTAGCCGCAGGATGCAAGAATATGGTTTTATGAATCATTTGATAACAGGTTACACAAAAATATCAAAGACTTTGAATATTAGGAGCCATTNACTAAATGCTTATCGTGACATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01184	32492	34334	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030042 actin filament depolymerization

cellular_component

GO:0005622 intracellular

GO:0015629 actin cytoskeleton

molecular_function
GO:0003779 actin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001184s00030526.1	PF00241.15	Cofilin_ADF	19	144	6.00E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	143.513
SRR1783600	control	145.247
SRR1783602	moderate drought stress	80.068
SRR1811619	moderate drought stress	80.423

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	184.113
DRR006520	Root Summer glycyrrhizin high producing strain	187.319
DRR006521	Root Winter glycyrrhizin high producing strain	148.087
DRR006522	Root Winter glycyrrhizin high producing strain	146.237
DRR006523	Root Summer glycyrrhizin low producing strain	187.070
DRR006524	Root Summer glycyrrhizin low producing strain	188.649
DRR006525	Leaf Summer glycyrrhizin high producing strain	94.124
DRR006526	Leaf Summer glycyrrhizin high producing strain	95.436

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.486
SRR2868004	Drought Stress (root)	32.435
SRR2967015	Control (root)	26.465

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.695
SRR9715740	Leaf	67.421
SRR9715741	Leaf	35.243
SRR9715739	Root	22.170
SRR9715742	Root	36.706
SRR9715743	Root	32.202

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	84.419
SRR8749028	MeJA induced 9h	49.921
SRR8749029	MeJA induced 9h	78.368
SRR8749030	Uninduced	50.875
SRR8749031	Uninduced	58.745
SRR8749032	Uninduced	70.265

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.395
SRR8400027	Control - Root	17.401