Gene detail

Gene detail information of Glyur001184s00030523

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23250.1	7.00E-59	myb domain protein 15
NR	KEH23924.1	3.98E-129	myb transcription factor [Medicago truncatula]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	2.00E-77	Myb-related protein Myb4
trEMBL	tr\|A0A072U2K6\|A0A072U2K6_MEDTR	1.00E-129	Myb transcription factor {ECO:0000313\|EMBL:KEH23924.1}

Sequence

Transcript Sequence

>Glyur001184s00030523.1
ATTTTTAATTTAAAGCAAGCAAGCAAGCAAGCACCAATTGCTCGTGTGTGAGACTTGGAAGTTTCAACTCTCTCAACTTTAATTGAATTTCACTTTTCAATTGTTGGTATATATAAACAGAAGAGAGCCTGCAGTTCTAGGCTAGCTTTCAATTTGGGCTCAGCAGCTAGCAGNAGGAGTAATAGTAATTACAAGATGGGGAGAGCTCCATGCTGCGAGAAAATGGGATTGAAGAGAGGGCCATGGACTCCAGAAGAAGATCGAATCCTCATCGATCACATCAACACCTATGGCNATGCCAATTGGCGTGCTCTGCCCAAACAAGCTGGGTTGCTAAGGTGTGGAAAGAGTTGCAGACTGCGGTGGATAAATTATCTGAGGCCAGACATCAAACGGGGTAACCTTACCAGAGAAGAAGAGGACGCTATTATCAATTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATTGCAGCTAGGCTACCGGGCCGAACGGACAACGAGATTAAAAACGTGTGGCACACCCACTTGAAGAAGAGGCTGCCACAAAACAAACAAGGAGCCCACAACAACAACAACAACCCAAAAAGAAATAACAAAAAACAAACCAAGTTGGATATTGTGGTCGACGCCTCCAAATCCAACCAAGATGACAAACAAGAAGATGATGATGATGGGTCACAATCTCATCAACAGTGTTCTAGTGACATGTCCTCCCTCAGCACCAGTAGTGACAATAACCACGAGCATAATAATAATAATAATAGTAGTAGTAGTAGCAGCATTGCAACTACTACTACTACTAATAATAATAATCATGACATGTCCATAAATAATGATAACGATGATGATGGTGGTGATTCGGCGGAGAATAATCTTGCATTGGATGAGGATTTCTGGATGGAAGTGCTGTCATGTGATAATAATTCAAGTGAGAGTACTACAACTACAAGCGGTGTTTTGGACAGTAATATTAGTGGTGGTGCTGACTATCGGGTTCAAGTTCCATTCTCTCCAGTATTGGGGAGTGAAGAAGGAGTGCTTANTGGTAGTTCATTGAGTATGTGCGATGAGATGGACTTTTGGTACGATGTTTACTCCAGAGCTGAGGATATAAGCGAGCTACTGGAATTGTGATAGATATCATTGTTATGTTCATTCCATGGAACAAAAATATTAATCGTGTTTGTTCTATTGTTTGGACTTGAAATAATTGGAATCGATGAGTCACCCCATTGCGGTATTAGATTTATGGTTTTTTTAATATTAGTTTTGTAACCTAACTCATCCCTATAAAACCGTCTTATAAGGTGATCAGGGATGTCCTTGCATTGTATACTTTTTTAATTTATAGTTTTATCTCTAGTCGATGTGAGACTTGATTTTTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01184	16281	19357	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001184s00030523.1	PF00249.26	Myb_DNA-binding	14	61	7.90E-14
Glyur001184s00030523.1	PF00249.26	Myb_DNA-binding	67	112	1.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.783
SRR1783600	control	0.813
SRR1783602	moderate drought stress	0.564
SRR1811619	moderate drought stress	0.541

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.578
DRR006520	Root Summer glycyrrhizin high producing strain	3.698
DRR006521	Root Winter glycyrrhizin high producing strain	38.316
DRR006522	Root Winter glycyrrhizin high producing strain	37.163
DRR006523	Root Summer glycyrrhizin low producing strain	8.867
DRR006524	Root Summer glycyrrhizin low producing strain	8.483
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.267
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.133

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.888
SRR2868004	Drought Stress (root)	17.004
SRR2967015	Control (root)	21.971

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.148
SRR9715740	Leaf	0.815
SRR9715741	Leaf	13.352
SRR9715739	Root	1.852
SRR9715742	Root	16.924
SRR9715743	Root	18.573

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.520
SRR8749028	MeJA induced 9h	11.255
SRR8749029	MeJA induced 9h	6.494
SRR8749030	Uninduced	45.006
SRR8749031	Uninduced	2.403
SRR8749032	Uninduced	8.542

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.167
SRR8400027	Control - Root	6.837