Gene detail

Gene detail information of Glyur001183s00030468.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23250.1	5.00E-72	kinases;protein kinases
NR	XP_010057984.1	1.54E-147	PREDICTED: cysteine-rich receptor-like protein kinase 10 isoform X2 [Eucalyptus grandis]
COG	YP_284821.1	5.00E-06	protein kinase:GAF [Dechloromonas aromatica RCB]
Swissprot	tr\|Q8GYA4\|CRK10_ARATH	2.00E-67	Cysteine-rich receptor-like protein kinase 10 (Precursor)
trEMBL	tr\|V7BBD5\|V7BBD5_PHAVU	1.00E-135	Uncharacterized protein {ECO:0000313\|EMBL:ESW15182.1}

Sequence

Transcript Sequence

>Glyur001183s00030468.1
ATGATTCACATGACCAAGAAAAGCCTAGTAGCATTGCTACTCAGCACTACCCTTATTTTTGTGCTGACCGTTACAGAAACCTCTGCATCCGTGTTCAACAACGTGAGCTGCAGTAGCAACAACACTTTCACTCCAAACAGCTCCTTCCACGCCAACCTCAACACCCTCATCTCTTCGCTTTCCTCCAACGCCACCGTCGGCGGTGGCGTCAGGTTCTTCAACACGACAGCCGGAAAAGACTCCGGCGCCGCCGTCTACGGCCTCTTCATGTGCCGNGGTGACGTGCCACTCGCCCTGTGCAGGGAGTGCGTGGGTTTCGCAACCCANACCATAGCCTCNTCGTGTCCATCATCCAAAGAGGCTGTGATCTGGTACAACGAGTGCTTATTGCGCTACTCCNACAGACTCATCTTCTCNCACATGGAAACATGGCCTAGGTACCAGATCAAGATCCCAATGGGTGACCCTGTGATCTTACACAGNCAAGGCTTCTACACAGCATTGAGGTCTATTTTGAATTACCTTCCAAACGAAGCAGCGCTTGCTCTCACGGCCGGCGGGTCTAACAAATACGCCGTCAAGCAAGAAAACGCTTCCGCCACCACAACACTCTACGGCCTTGCACAGTGCTCGCCGGACTTGTCCGCCGGCGACTGCACGCGGTGTGTCACGGTTGCGGCGAAGGAGTTTACAAGGTCTTGTTGCGGTGGTAGCATAGGGGAAAGTGTTCTGTTTCCCAGTTGCATTGTTAGGTATGAAACTTACCCGTTTTATCAGCACTCAGGAACCTCGGCACCAGTTAAGGTTGGGTTTGAAATTACTACCTTGGATTCCTTGCAATTTGATTTTGCCACAATTGAAGTAGCAACCAACAAGTTTTCTCNAGACCGCAGGATAGGCAAAGGGGGGTATGGAGAAGTCTTCAAGGCTTGGAACCAATGGAGTGAACGAGAAGACATTCAGCTGAACATGAATCATATTCCAATTCAGTATCCGGCTCAGAAGATGGTTCCTCTAACTCTCCTCTTCCTTCTCTGCTGTTTCCCAATTAACCTCTTGATTAACAGAACCCAAGCAGAGGCTACTTACAATTACCATTCCTGTCCAAACACAACCAGTTTTGCCCCAAACAGCACCTACCACACCAACCTCAACACTTTACTTTCCACTCTCTCTTCAAACTCCAATCAAAGCGACGGGTTCTACAACACCACCACCACTGGCCAAAACAACCCGAACGACACGGTCTATGGTCTCTTCCTCTGTCGGGGTGACGTCACCACTCAGACATGCCAGGACTGTGTCTCCACAGCAACCNAACAAGTCCTCCAAAGATGTCCCAACGAGAAAGACGCCGTCATTTGGGACGACGAGTGCTTGTTACGGTATTCCCATGAGTCTTTCTTCTCCACCGTTCAAGTGGGGCTTCTGTTTTTCATGTCCAACACCGGCAATGTCTCTNACCAGAGTGGCTTCATGGATTTGCTGGCTGTTACCGTGCGTGCAGTGGCCGAACAAGCGGCAAATGGTGACGGTGGCAAGAAGTTTGTCACCAAAGAAGCCAACTTTACTGGTTTTACAGTTTTGTACACGCTTGGACAGTGCACACCGGATTTGTCGGTGTCGGATTGCAATACGTGCCTGCAGGTAGCGATTTCGAACCTGCCCAATTGCTGCAATGGGAAGAAGGGGAGAAGAGTGCTCACTCCCAGTTGTTATGTTAGGTATGAAGAATACCCCTTTTACCAAAGGGTGGCTTTGGCGCCAGTGCCTACCCCAGACTTAACTCCCAAAAAAGAAAAAAGCAAGACATCAGCAGGGATAATCATTGCCATAGTTGTCCCTGTTGTTATATTCATGGTGCTCATCTTTCTGTGCTGCTGGTGCCTAAAAAGAGGACCAAAGAAGTATACTTCTTTTTCTGAACAAAATGACCCTCAGTCAGGAAATAAACTGGATTGGTCAAAACGTTACATGATCATTGGTGGAATTGCCCGAGGAATCCTTTATCTTCATGAAGATTCCCGGCTCAGAATTATACACCGTGATCTTAAAGCTAGTAATTTGACCAAACTCAAGCAAACAAATAGAATTGCCGGAACCTTTGGCTACATGTCTCTAGAATATGCAATGCATGGGCAGTTTTCAGAAAAATCCGATGTGTATAGTTTTGGTGTTCTGGTTCTAGAAATTATCAGTGGCAAGAAGAATAAATCTTTCAATGTATCAGGCTACGATAAGGACCTGTTGAGCCATGCTTGGAGGCTATGGAGGGAAGGGGCACCATTGGAACTATTGGATCCCGCTCTAAGGTATTGTTATTCAAGAGAAGAAGTTATCAGATGCTTTCGTATAGGCTTGTTGTGTGTTCAGGAAGACTCAGCTCAGAGACCCAAAATGCGGTCCATTATTGTAATGTTAAAGAGTCACTCTGCCACAATGCTTGAACCCCAGGAACCAGCAACTTTTCGCTACAATTCTACCAGTATGCCAACCAAGGACATGGAGCTGCAGTCTTCTGATCAATCAACAAGCAAGTCAACCCTGAGGTCCGAGGATGAAGATTCTATTTCTATATTATACCCTCGACTTTCCATCTCTACTGAAGCATCAGATGTCCCTATTTTCCTTCGTGTAAACTGCACAATCAACGAAACCTTCCCAGCCAACACCACTTTCCATTACAACCTCAGGACCCTCCTCTCTTCCTTGTCTTCCAACGCCACCGGAAACACCGAATTTTACAACACCACAGTGTCCGGCGGAAGCCCCTCGGACACGGTCTACGGTCTCTTCACATGCAGGGGTGACGTGGCCCCTGAACTATGCCAAAAGTGCGTGGCAAACGCAACACAAAGACTAGGTGGACAACAACAAGGCTCCGGCTTAGACACNTGTCAGTTTGCGAAAGGTGCTATAATCTGGTACGACGAATGCATGGTTCGGTATTCCAACAGGTACTTCTTCTCCACGGTGGACACAAGGCCTAGAATGCGCCTGCGGAACACTGCGAATGTCTCTCACACAGAAAGCTTCATGCGTTTGTTGTATACTACCTTGAATGAAACTGCAGATGAGGCAGTGAATTCTTCCAATGGTGACAGTGTCAGGTTATATGCCACAGGGCAAGCTGAGATTTCTGGGTTCCAAACCCTCTATACTCTGACTCAGTGTACACCGGATTTGACACCCCGAGATTGCAGAAGGTGTCTCAGTGGTGTGATAGGGGATCTTCAGTGGTGTTGTCCTGGAAGTCAAGGAGGAAGAGTTCTGTATCCTAGTTGCAACTTTAGGTTCTCACGTTCTCACACTTTTTGA

Protein Sequence

>Glyur001183s00030468.1
MIHMTKKSLVALLLSTTLIFVLTVTETSASVFNNVSCSSNNTFTPNSSFHANLNTLISSLSSNATVGGGVRFFNTTAGKDSGAAVYGLFMCRGDVPLALCRECVGFATXTIASSCPSSKEAVIWYNECLLRYSXRLIFSHMETWPRYQIKIPMGDPVILHXQGFYTALRSILNYLPNEAALALTAGGSNKYAVKQENASATTTLYGLAQCSPDLSAGDCTRCVTVAAKEFTRSCCGGSIGESVLFPSCIVRYETYPFYQHSGTSAPVKVGFEITTLDSLQFDFATIEVATNKFSXDRRIGKGGYGEVFKAWNQWSEREDIQLNMNHIPIQYPAQKMVPLTLLFLLCCFPINLLINRTQAEATYNYHSCPNTTSFAPNSTYHTNLNTLLSTLSSNSNQSDGFYNTTTTGQNNPNDTVYGLFLCRGDVTTQTCQDCVSTATXQVLQRCPNEKDAVIWDDECLLRYSHESFFSTVQVGLLFFMSNTGNVSXQSGFMDLLAVTVRAVAEQAANGDGGKKFVTKEANFTGFTVLYTLGQCTPDLSVSDCNTCLQVAISNLPNCCNGKKGRRVLTPSCYVRYEEYPFYQRVALAPVPTPDLTPKKEKSKTSAGIIIAIVVPVVIFMVLIFLCCWCLKRGPKKYTSFSEQNDPQSGNKLDWSKRYMIIGGIARGILYLHEDSRLRIIHRDLKASNLTKLKQTNRIAGTFGYMSLEYAMHGQFSEKSDVYSFGVLVLEIISGKKNKSFNVSGYDKDLLSHAWRLWREGAPLELLDPALRYCYSREEVIRCFRIGLLCVQEDSAQRPKMRSIIVMLKSHSATMLEPQEPATFRYNSTSMPTKDMELQSSDQSTSKSTLRSEDEDSISILYPRLSISTEASDVPIFLRVNCTINETFPANTTFHYNLRTLLSSLSSNATGNTEFYNTTVSGGSPSDTVYGLFTCRGDVAPELCQKCVANATQRLGGQQQGSGLDTCQFAKGAIIWYDECMVRYSNRYFFSTVDTRPRMRLRNTANVSHTESFMRLLYTTLNETADEAVNSSNGDSVRLYATGQAEISGFQTLYTLTQCTPDLTPRDCRRCLSGVIGDLQWCCPGSQGGRVLYPSCNFRFSRSHTF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01183	55047	71106	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004713 protein tyrosine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001183s00030468.1	PF01657.12	Stress-antifung	36	134	1.20E-24
Glyur001183s00030468.1	PF01657.12	Stress-antifung	163	257	1.30E-17
Glyur001183s00030468.1	PF01657.12	Stress-antifung	365	468	4.40E-29
Glyur001183s00030468.1	PF01657.12	Stress-antifung	483	581	1.30E-19
Glyur001183s00030468.1	PF00069.20	Pkinase	648	689	0.00011
Glyur001183s00030468.1	PF07714.12	Pkinase_Tyr	701	805	1.70E-07
Glyur001183s00030468.1	PF01657.12	Stress-antifung	881	986	1.20E-22
Glyur001183s00030468.1	PF01657.12	Stress-antifung	1004	1103	2.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.999
SRR1783600	control	11.398
SRR1783602	moderate drought stress	8.131
SRR1811619	moderate drought stress	7.942

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.461
DRR006520	Root Summer glycyrrhizin high producing strain	3.631
DRR006521	Root Winter glycyrrhizin high producing strain	4.622
DRR006522	Root Winter glycyrrhizin high producing strain	4.592
DRR006523	Root Summer glycyrrhizin low producing strain	7.141
DRR006524	Root Summer glycyrrhizin low producing strain	7.576
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.726
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.148

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.892
SRR2868004	Drought Stress (root)	1.105
SRR2967015	Control (root)	0.811

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.958
SRR9715740	Leaf	17.426
SRR9715741	Leaf	16.683
SRR9715739	Root	2.595
SRR9715742	Root	4.485
SRR9715743	Root	3.706

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.117
SRR8749028	MeJA induced 9h	13.782
SRR8749029	MeJA induced 9h	8.038
SRR8749030	Uninduced	10.921
SRR8749031	Uninduced	12.481
SRR8749032	Uninduced	10.663

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.819
SRR8400027	Control - Root	6.076