Gene detail

Gene detail information of Glyur001183s00030466

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05200.1	9.00E-53	cysteine-rich RLK (RECEPTOR-like protein kinase) 25
NR	XP_004496791.1	1.01E-162	PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Cicer arietinum]
Swissprot	tr\|Q9M0X5\|CRK25_ARATH	3.00E-66	Cysteine-rich receptor-like protein kinase 25 (Precursor)
trEMBL	tr\|K7N3E1\|K7N3E1_SOYBN	5.00E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G27761.1}

Sequence

Transcript Sequence

>Glyur001183s00030466.1
TCCCCATCCCACGATATTTTTCTCCACCTATACGTAAAATGGTTGGATTAGGAGGTTGCCTTTAGTTAATGTGTTTGTTTTGAGGTCATTCCCATTGCCTAATTCACGTTGACTCTTTGCATGTGTTCATTCTAAAATCCCCTTTTAGCCCTTCTATATTTTCAGTGGCTGTCACTCTCTACATCTAATCCAAAAAAAAAAACACCAGGTTCTAAAGAAAAACTCAAAAAAGAAACAGAAAATATTAAAAAACAAATGGTTAATTGCAGAAATGTACCTTCCTTTCCAAACTTTTTTTCCAAAGGAAAAGAAGATGCCTCCTTCCAAGTACTCTGTAATTTCCCCTGTTTTCCTATTCTTCCTATTCTTCCCAACCGACGCAACTCCAGTTTACAGTTCTCATTACTGCACAGACTCTTCCAAATACCAACCAAACACCACNTTCCAAACCAATCTCAACCTCCTTCTCTCTTCCCTTTCTTCCAACGCCACCACAGGCACCCATTTCTACAGAACAAAAGTTGGAAATGAAGCCCCTAACGTCGTCAAGGGCCTCTTTCTCTGCCGCGGCGACACCACCACCACCGCCTGCCACGACTGCGTCACCGCTGCGGCGAGAGAGCTAAAACGACGGTGCCCTGTCGAGAAAGAGGCCATAATCTGGTACGATCTGTGCACCATACGCTACTCGAACCAATATCTCAACAACATAGTCCCCGGCGTGGACTTGTCTGCTTCAAAAAGCGTGGCTCGCGTGGACCTCAACCGCTTCAACGAACTCCTGGCCGGGTTACTAAATGATCTTGCAACGAAGGCAGCGGGTTCGGCGGAAGAGAAGTTCGCAACGGGGGAAGTGAACTTCACGCGCTCGGATACCCTTTATGGGTTAGTTCAGTGCACGCCGGAGTTGTCGACGTTTGATTGCAACATGTGTTTCAGAAGCGCAATTGCATCTGTTCCGAATTGCTGTGATGGGAATCAAGGGGCGAGGGTGTTGCTTCCTGGATGCAATATCAGATATGAGCTATATCCATTTTACAATAGTACCACCGAGGCACTGACCCCACCGGTTCCGGTGGTTCAATCTCGTCCTTCAGGACGGAGTCGAGTTGAGGTGATTCTTGCGTTTGTTGTCCCTGTTGTTGCCGCAATGGTGCTTTTCACTTTTGGTATCTGTTCTGTCATGAGAAAGCAAGCAACAAGTATGATACAGTTATGGAGGAAAACGGATTTTACTGAGATATAGATGGGACTGATGCTGGAAACATTTAAGGTAGTACGAGATAATTCTCGTTGACGCACGGGGAATCTTCACAAAGTTTATTGGGGCAATGCTAGTGCTGAAAAACAAGAGAGTCGAGACTTATTTCCATTTGGTATGCTTAATTTTCAAGGGCGTAATGTAGAGTGACGTTGGAAATGTTGGATTGCTAATGTGACTGTGAAGTCATGTGTGCATCCATCTTTGATTTGTTTGGTTTAGGAAGATCCAACCGTGGCAATCTTAGGCGGTTCTCTTGCCACTACGGGTGTAGACTGTAGACTATAAAGAATGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01183	48388	50163	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001183s00030466.1	PF01657.12	Stress-antifung	44	141	5.30E-27
Glyur001183s00030466.1	PF01657.12	Stress-antifung	165	255	5.00E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.763
SRR1783600	control	4.961
SRR1783602	moderate drought stress	16.821
SRR1811619	moderate drought stress	16.454

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.252
DRR006520	Root Summer glycyrrhizin high producing strain	23.306
DRR006521	Root Winter glycyrrhizin high producing strain	74.049
DRR006522	Root Winter glycyrrhizin high producing strain	73.335
DRR006523	Root Summer glycyrrhizin low producing strain	30.797
DRR006524	Root Summer glycyrrhizin low producing strain	31.422
DRR006525	Leaf Summer glycyrrhizin high producing strain	60.112
DRR006526	Leaf Summer glycyrrhizin high producing strain	60.125

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.140
SRR2868004	Drought Stress (root)	9.023
SRR2967015	Control (root)	32.383

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.975
SRR9715740	Leaf	49.000
SRR9715741	Leaf	44.982
SRR9715739	Root	3.576
SRR9715742	Root	1.767
SRR9715743	Root	1.612

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.984
SRR8749028	MeJA induced 9h	18.953
SRR8749029	MeJA induced 9h	13.880
SRR8749030	Uninduced	17.886
SRR8749031	Uninduced	4.809
SRR8749032	Uninduced	5.958

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.372
SRR8400027	Control - Root	5.301