Gene detail

Gene detail information of Glyur001183s00030465.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23180.1	1.00E-86	cysteine-rich RLK (RECEPTOR-like protein kinase) 10
NR	KCW75396.1	2.80E-174	hypothetical protein EUGRSUZ_E04150 [Eucalyptus grandis]
COG	YP_007201945.1	2.00E-15	protein kinase family protein [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q8GYA4\|CRK10_ARATH	4.00E-99	Cysteine-rich receptor-like protein kinase 10 (Precursor)
trEMBL	tr\|A0A061GN85\|A0A061GN85_THECC	0	Cysteine-rich protein, putative isoform 1 {ECO:0000313\|EMBL:EOY28569.1}

Sequence

Transcript Sequence

>Glyur001183s00030465.1
CAGATGGATTGTCACGTGTCATCCAATCATATATGACAGCTGGACACATTTATCCAGTGTGACAACGACACGTGACACGACACGTGACAGTCCGTCTGCCACGTCAGTTTTTTTTAATGAAAGTTAACGACAAAGATAAAAAAAGAAATGACCTCTTATTCCAGGGATAAAACATAAAAAAAAAATTTACAAAGACAAAACTCAAAAATAGATATATTTACGGGTACGACTCGTATATCTAAGCCAAAAAAATAATTACTATAAAAGGCCCGTTTCCNTTCCAATCAGAGGGAGGCAAGTGAGTATTTGACTAATCTTCTTCCGCATTGAATATTCATCATTCATGTCCACTTTAGAAANGTAGCTCCATTGACTTTCATCAAGCAGTTTTGGTCGCGGTGAGGAGGGCCAGGGGTATAGCATTATTTTTCCCTCCTGAAACTCATCACCCACCAGAATCTAACGAACACGATGAAACATTAAGTGCTAGAACAAAAACGAAAACCGATTCGAGAGAAGAAAGGGGCGTTGGAATTTTACAATTTACAGTGCCCTTTCTCTCTGAGAAAACAAACATAGGAAGAGATATAGAGAGATGAGTATCTTCAAATTCAAACCCTCTGCAACTGCAACCCACTTGATTCTTGTATCCTTGTTTGGGTTGCTGAGTTTCGCATGTGAAGCAGCTCCGGCATACAGCGCTCACGCCTGCACAGATGGATCCTATTACCGACCCAATACAAGTTTCCAATCCAGCTTGAATACCCTCCTCTCTTCCCTTGTCTCCAACGCCACCCTCCACGACGGATTCTACCGCACCAACATGCCCCTTGGATCCCCCAACGACTTGAAAGGACTNTTCCTCTGCCGCGGCGACACCACCCCCTCCGTGTGTGAACAGTGTGTATCCGCCGCAGCCAATAACATCACCCGTCGCTGCACCAACCAAACAGAGTCCATAATCTGGTACGACGAGTGCATGGTGCGCTACTCCAACGACTCCTACTTGAACAACATAGTCCCGGGAACTAACCTGGAGAACACGGAGAACGTCACCGACTCAGAGCGGTTCAGTGAATTTCTGGCATCCACGTTGAAGGATATAGCACAGGAAGCCATGAATTCAGCTTCAGGTAAGAAGTTTGCCACAAAAGAAGCAGATTTCACAAGCTCCATGAAGCTGTACTCCCTGGCGCAGTGTACACCCGATTTGTCCACCTCTGAATGTAACACGTGCTTCCAAAGTGCCATCAGTTCCCTTGGAAACTGCTGTGATAGGAAACGTGGCGCCAGATCCCTGCTTCCCGGTTGTAATATTCGATTTGAACTGTACCCCTTTTACAACGTCTCCGCCGTATCCACTCGGCCAAATCATCCCTCTCCTTCTTCAGGAAAAAGCAACGTATCTATAGTTGTTGCGATTGTTGTCCCAATTGTTGTTGCCGTGGCACTTTTCATTCTCGGCTGCTGCTTCCTGCGTAAGAGGGCAAGCAAGAAGTATAGTACATTCATACAGGACCTGGGTTCAAATTCCATTCGGGAGGAGCTTACAGATATAGAGTCCTTGCAATTTGACTTGGCTACGGTTGAAGCAGCCACAGACTGCTTTGCAGATGTGAACAAGATTGGCCAAGATCCTATAAAGCAAAGAGAGTTAGATTGGTCAACACGCTACAAGATTATAGTTGGCATTGCTCGAGGAATGCTTTATCTCCATGAAGATTCCCAGCTTAGAATTGTTCATCGTGATCTCAAAGCTAGCAACGTTCTATTAGATGAAAATATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCAGGCAGATCAGACTCAAGTAAATACAGGAAGGATAGTGGGGACCTACGGTTACATGTCTCCAGAGTATGCAATGCGTGGACAATTCTCCGTAAAATCAGACGTTTTCAGCTTTGGTGTCCTAGTTTTGGAGATCGTGAGTGGCAAGAAGAATACTGACTTTTATCTATCGAATCATGCTGATGACCTCTTAAGCTATGCTTGGAAAACTTGGACAGAGAAAACACCTTTGGAGTTGCTGGATCCAACACTAAGAGGTTCTTATTCAAGAAATGAGGTCATGAGATGCATCCATATTGGTTTATTGTGTGTTCAGGAAAGTCCAACTGACAGGCCTTCGATGGCAACTATTGCACTTATGCTGAACAGTTATTCAGTTACCTTGTCATTACCTCGACGGCCAGCATCTTTCCTGCGTGGAAGAACACCTGATAGGCTAAAGCATGGGCTTGATTCTGATCAGTCTACCACCTGTTCAATTCCTTGGACGGTAAATGAAGTATCCATTACTGAAGTATACCCTCGATGATAAAAGATCGTTTATATATTTTCTTTAATCCATCCAGTGTATGTTCAAATCATGTCACACTATGGCATGACAGTTACATTTACCTAGTCGATATATATTGTAAATGTTAATGGCTAAAAATAATTCTATCTGATGAATAGTAAAAGTTATCATCATTGATTCTTTTGGATATATCCTTAAAAACAAACTTCATGCTGGATGCACATGCAGAATAGATAAAGCATGATACCCTTGGAGACACCAGAGTAATTTGCAATGTCGACCACATTTTTTTTAACATAAGGCTGATTTCCTGTGGGATTCTTTTCTGCAACCGATGTTAAGTTGGCTAAACTAAGTGCTGCTTCACTAAATGCAAGCACCTAGTTCTCCGGTAGTGATAAATTTGAATTATGATTCTGGTGATTCAATATCACTTCATGATTTTGATGTGGCATAGTTCAGAATTTATATGCTGGTAGGAGCTTTCCCAATATGAGAAACTAAACAACATACCTATGCCTGTTGTGATCTTCTCTATATTTCAAAGGGCCTTCTATATTTTCTCGCAAGACAATAGTGTTAAAGAGGAAAAGGGTGGCTGTCACTTGTCCGTTGTCCCAGGTGAGGACTCGCGGTGCATTATTGTGGACAATACCTGTTGACTCAACCAGTCAACCATTTATTACCAATGGGTACCATTTGGTAATAAATTTCCATTAATCCAGGGGGCTATTTACTTATTTTCCATCTTCACGGCAGCAAAGTGCTTAGAGAGGCTTAGTTCTTATTGGCTTTAAATTTGTTTTGAGGAAGGTGCTCCAGCCTCCAAGGTGTAGAATGTCAGAAGATTTATGGAAATCAATTTTTGCTTGCTTTTTCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01183	42302	46672	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001183s00030465.1	PF01657.12	Stress-antifung	37	135	1.50E-24
Glyur001183s00030465.1	PF01657.12	Stress-antifung	150	248	3.60E-20
Glyur001183s00030465.1	PF07714.12	Pkinase_Tyr	327	529	2.30E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.304
SRR1783600	control	3.251
SRR1783602	moderate drought stress	10.032
SRR1811619	moderate drought stress	9.997

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.076
DRR006520	Root Summer glycyrrhizin high producing strain	8.022
DRR006521	Root Winter glycyrrhizin high producing strain	17.729
DRR006522	Root Winter glycyrrhizin high producing strain	17.087
DRR006523	Root Summer glycyrrhizin low producing strain	10.220
DRR006524	Root Summer glycyrrhizin low producing strain	9.960
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.905
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.734

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.977
SRR2868004	Drought Stress (root)	20.401
SRR2967015	Control (root)	30.250

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.241
SRR9715740	Leaf	24.820
SRR9715741	Leaf	23.496
SRR9715739	Root	2.968
SRR9715742	Root	5.798
SRR9715743	Root	5.007

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.374
SRR8749028	MeJA induced 9h	16.062
SRR8749029	MeJA induced 9h	5.521
SRR8749030	Uninduced	12.271
SRR8749031	Uninduced	11.567
SRR8749032	Uninduced	6.881

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.530
SRR8400027	Control - Root	7.268