Gene detail information of Glyur001182s00029378 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27700.1 | 4.00E-68 | Rhodanese/Cell cycle control phosphatase superfamily protein |
| NR | XP_004502705.1 | 3.09E-133 | PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic-like [Cicer arietinum] |
| COG | YP_008147096.1 | 2.00E-06 | hypothetical protein SCE1572_03165 [Sorangium cellulosum So0157-2] |
| Swissprot | tr|Q94A65|STR14_ARATH | 3.00E-96 | Rhodanese-like domain-containing protein 14, chloroplastic (Precursor) |
| trEMBL | tr|G7J862|G7J862_MEDTR | 3.00E-122 | Uncharacterized protein {ECO:0000313|EMBL:AFK45948.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01182 | 422 | 2617 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001182s00029378.1 | PF00581.15 | Rhodanese | 72 | 200 | 1.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.800 |
| SRR1783600 | control | 0.950 |
| SRR1783602 | moderate drought stress | 2.585 |
| SRR1811619 | moderate drought stress | 2.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.381 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.192 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 52.563 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.116 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.135 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.089 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 107.574 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 112.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.896 |
| SRR2868004 | Drought Stress (root) | 1.224 |
| SRR2967015 | Control (root) | 2.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.471 |
| SRR9715740 | Leaf | 12.236 |
| SRR9715741 | Leaf | 9.080 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.097 |
| SRR9715743 | Root | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.678 |
| SRR8749028 | MeJA induced 9h | 6.847 |
| SRR8749029 | MeJA induced 9h | 8.469 |
| SRR8749030 | Uninduced | 4.398 |
| SRR8749031 | Uninduced | 3.405 |
| SRR8749032 | Uninduced | 7.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.458 |
| SRR8400027 | Control - Root | 0.390 |