Gene detail

Gene detail information of Glyur001180s00029553.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66920.2	2.00E-106	Protein kinase superfamily protein
NR	XP_006583413.1	0	PREDICTED: probable receptor-like protein kinase At1g67000-like isoform X1 [Glycine max]
COG	YP_001958461.1	4.00E-24	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q3ECH2\|Y1670_ARATH	2.00E-126	Probable receptor-like protein kinase At1g67000 (Precursor)
trEMBL	tr\|G7KMN1\|G7KMN1_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:AES76644.1}

Sequence

Transcript Sequence

>Glyur001180s00029553.1
ATGACATCCATAGTCACCATGCACCTTACAACATCCATAATCACCATCTCTTTGTTGTTATTGTCAACAATATTTTTGCTTTTGCCACCATCCCACTGTGAACAACCCGTTTACAACAGTGACCCGGTTTGTAAGGAGCAGACCTACAACTGCGGGTCATTGCGCAACATCTCCTACCCTTTCTGGGGACACAACCGACCCCAACACTGTGGCGGCGGTAACCCATTNAAGCTCAACTGCCACCACAACATTACCGATGATAATAATAATATCACCACCATTGAAATTGGGTCACAAGATTTCACAGTGCTTAAGATTAACACCACTTCCAACACCATGAGGTTGATTCGAACAGACCTTGCCCATGATGTTTGTTCTCCACAGTTCAACGACACTTACTTGAACACCTCCTCCAATAATTTGTTCCGGTATGATCCATCTGTGTACAACGTTGCCGTATTCTACAATTGTTCCTCTGCTGCAGACATCACTTTTGGGTACTTTAACTGTACATATGGGTATGCTGTGTTTGCTGGGGGTGTGGAAGATGAACTGAGGAAAGAGTTTCCGTGGCTAATTCAGACATGTGGCCGACATACCCAAGTTCCCGTTGATGTTCCTCTCAGGGATTATCGTGATGATCGGCTTGATGTTCTCCTCGCTACTGGGTTTCCGGTTCCTCCTGCTGGACGCGCGACGATCTGGCGTGACAAAGAGACCAAAATCGTTGGGAAGGGAAACGGTGTTACTAGTGCAACGATNGCAGGAATTTTGATAAGCATCACTGTTTTCTATTTTAGATGCAAGTCGTCAACATGGCAAGGAAAATTTTGGTTCACGACAAAAAGTAACCAAAANATTGAAGAATTCNTGAAAAGCCAAGGNNCCTTNCCTCTAAANCGATATAAATTCTCACATATCAAGAAAATGACCANCTCCTTCAGAGTTAAANTAGGACAAGGTGGTTTTGGTATTGTATACAAGGGAAAGCTACNNAATGATGGTTCCCTNNTGGCTGTAAAGTTGTTNAATGTATCCAAAAAGAATGATGAAGAATTTATCAATGAGGTTGCTAGCATTAGCAGAACATCTCATGTTAATGTTGTCACACTTCTTGGATTTTGTTTGGAAGGCCACAAGAAAGCTCTCATCTATGAGTTTATGNCCAATGGTTCCCTTGACAAATTTATCTATGGAAAAGGACATGAAACCAATATTNTATCATTGAGTTGGGAAATTTTGTATCAAATTGCCATAGGAATAGCTCGAGGGCTGGAGTACTTGCATAAGGGATGCAANACTCGGATTTTACATTTAGACATAAAACCACATAATATCCTCTTGGATGAGAATTTTTGCCCCAAGATATCAGATTTTGGGCTTGCAAAGCTCTGTCACANGAAAGAGAGCATTGTTTCCATGTCGGATGCCAGAGGGACAATGGGATATGTAGCTCCAGAATTTTGGAACCGACATNTTGGAGGAGTTTCACACAAGTCTGATGTTTATAGCTATGGAATGATGCTGCTAGAAATGGTGGGAGGGAGGAAAAACATTAATGCTGAAGCTAGTCACACAAGCGAGATATACTTTCCTCATTGGGTGTACAACAGGCTTGAGCTAGGCAGTGATTTGAGACCTGATGGAGTGATCGCCACAGAAGAAAATGAGATTGCAAGGAGAATGACAATTGTGGGTTTGTGGTGCATTCAAACGTTTCCAAATGATAGACCTCCAATGAGTAGAGTGATTGATATGTTAGAAGGCAGCATGGATTCCTTAGAAATACCACCAAAACCTTTGCTTTCTTCTCCTACTAGATCAGCNNCAGAATCTTCCACTTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01180	38069	43910	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001180s00029553.1	PF00069.20	Pkinase	317	527	1.80E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.963
SRR1783600	control	0.767
SRR1783602	moderate drought stress	0.608
SRR1811619	moderate drought stress	0.672

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.680
DRR006520	Root Summer glycyrrhizin high producing strain	1.547
DRR006521	Root Winter glycyrrhizin high producing strain	0.458
DRR006522	Root Winter glycyrrhizin high producing strain	0.469
DRR006523	Root Summer glycyrrhizin low producing strain	1.729
DRR006524	Root Summer glycyrrhizin low producing strain	1.379
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.252
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.602

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.368
SRR2868004	Drought Stress (root)	0.834
SRR2967015	Control (root)	0.772

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.032
SRR9715740	Leaf	8.164
SRR9715741	Leaf	7.556
SRR9715739	Root	1.545
SRR9715742	Root	1.568
SRR9715743	Root	1.079

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.347
SRR8749028	MeJA induced 9h	5.897
SRR8749029	MeJA induced 9h	2.207
SRR8749030	Uninduced	12.959
SRR8749031	Uninduced	1.262
SRR8749032	Uninduced	1.508

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.320
SRR8400027	Control - Root	1.264