Gene detail

Gene detail information of Glyur001180s00029552.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18390.2	1.00E-105	Protein kinase superfamily protein
NR	XP_004512900.1	0	PREDICTED: probable serine/threonine-protein kinase At1g18390-like isoform X2 [Cicer arietinum]
COG	YP_002763346.1	2.00E-22	putative serine/threonine protein kinase [Gemmatimonas aurantiaca T-27]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	0	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|A0A072UB44\|A0A072UB44_MEDTR	0	Wall-associated kinase-like protein {ECO:0000313\|EMBL:KEH27004.1}

Sequence

Transcript Sequence

>Glyur001180s00029552.1
ATGATCCTTCAATTCTCCTTCCATTACATTATACTTCAACTATTATACACTATTACCATTATCTCCTTCTTGGTCACCACAGTTCTATCTGTTAATCCAAAGTTTGAGGCTTGCACACCTAGAAGCTGTGGAAATGGACCCCCCATAAAGTATCCTTTCTGGATTCCTTATGAACAAGACTCATTTTGTGGCTATCCTCACTTTGAAATCACCTGCATGGACAACAATCCAGTTCTCAGAACTTCTGATAATTATGACCTTTTGGTAAAAGATATCTCTTACTCTAACTCTTCATTTACTGCAGCCAACATAGCTGTCTATGAGAACAAGTCATGTCCTGCTCCCATGTACAATTACACCCTTGACCTTGATCAAACTCCATTTACCTATAGTCCTCAAAATTCCAATCTNTCTTTTTTCTACAACTGTACCACAGAACCTATGGATTACCCCNCTTATGAAGTGGACTGTGCAAAGAATGCTACACATTACTCCTTTGCTGTTTTTCATAAGGAGGCATTGGAGCATAAAAACTATTCCTTGAATGAGTGNCAGTTTATGGTTAATGCTCCATTGAGCTTGAATGCCACTGTTAATTTCACTAGCTTGTTGAGAATGAATTACACTGAGGTTTTGNAGATGGGGTTTCTTTTGAATTGGAGGGCTGCACCTGATTGCCAGCACTGTGAGAAAAGTGGTGGACATTGTGGATTTGATAATAATGAGTTCCTCTGCTTCTGCAAGGATAAGTCCTACCCAAAAAGTTGTGGTGGTGATGCAGACAAAGTGAACTGGGAGAGGAAACTCATTATAGGTGTTGCTTCTGGTGTGTTAGGAGCACTTCTTGCAGTGACCATTGGCTTCTATTTATATAAGCGCCGAAAGAATCGTTATGCAATGTCATATATACAATCTCGGAGCCTCTCTTCTTCTGATCCATCTTCAAAAGACCATGAGAAGGGAAGTCTACGCTTGGGACTAAGNAAACTGCGGGATGGTCGTTGTGTCGCGGTGAAGAGGTTGTATGAGAACAATTTCAGAAGAGTTGAGCAATTCATGAATGAAGTTCAGATCCTAGCTCGGTTAGTACACCCAAATCTTGTGTCACTATATGGATGCACTTCTCGCCACAGCCGTGAACTTCTCCTTGTCTATGAGTATGTCTCCAATGGAACAGTTGCTGATCANCTTCATGGTAGACATGCAAAACCCGGAAAACTCCCTTGGAGTGTTAGAATGAACATTGCAGTGGACACAGCAAATGCATTGAAGTATCTTCATGTTTCTGACATCATCCACAGAGACATAAAAACCAATAACATCCTTCTTGACAGTCACTTTCGCGTCAAGGTAGCAGATTTTGGACTCTCGCGTCTATTCCCAAACGATCTCACCCATGTTTCAACAGCTCCACAAGGTACCCCGGGTTATGTGGACCCGGAGTACCANGAGTGCTACCAGTTAACTGACAGAAGTGACGTCTATAGCTTTGGAGTGGTACTTGTTGAGCTGATATCATCCTTGCCTGCNGTTGANATNACAAGGCATAGGCATGAAATCAATTTGGCCAACATGGCNATTANCAAGATCCAAAACCAAGCACTTCANGAGCTTGTGGACCCTACCCTTGGGTTTGAATCAGATCAAAAGGCAAGGAAAATGATAAATGCTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGGGNTCCAAGGATATGAGGCCTTCTATGGATGAAGTGTTGGGTACTCTCAAGGATATTCAGAGTGATGGCAAATATAAGAGCCAACCTGAGGTAATGGATATTTCAGGTTCAACTGATGATGTTGCTGTGCTGCTTAAGGATGANCCACCTCCACCATCACCTGATTCAAATGTTGTGAGCAAGTCCACAACACCAAATGCTAGTGGATAAGTGAGTTTTAGTTTACATTTCAACAAGTTAACCTTTATCTGTAAGTTCTTATGAGAAGAAGAGATAGCATCAAACTGGTAGCATCCACCCAGTTACAGCCAGATACAGCTTCTGAGATTGAGATGTATATATAAATGATAAAGCTGCCTTGGTTATGAAATTTCATCTTTTGATAATTATAATTAGATGTTATTAATACTTTTTTTTCCAACAAGTTCAGATAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01180	33559	36492	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001180s00029552.1	PF14380.1	WAK_assoc	157	250	3.50E-15
Glyur001180s00029552.1	PF00069.20	Pkinase	330	580	3.10E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.047
SRR1783600	control	23.482
SRR1783602	moderate drought stress	11.900
SRR1811619	moderate drought stress	11.810

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.121
DRR006520	Root Summer glycyrrhizin high producing strain	14.671
DRR006521	Root Winter glycyrrhizin high producing strain	62.028
DRR006522	Root Winter glycyrrhizin high producing strain	61.438
DRR006523	Root Summer glycyrrhizin low producing strain	67.064
DRR006524	Root Summer glycyrrhizin low producing strain	67.680
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.467
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.356

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.197
SRR2868004	Drought Stress (root)	45.318
SRR2967015	Control (root)	36.412

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	124.255
SRR9715740	Leaf	100.169
SRR9715741	Leaf	156.907
SRR9715739	Root	31.745
SRR9715742	Root	63.704
SRR9715743	Root	60.636

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	197.678
SRR8749028	MeJA induced 9h	139.501
SRR8749029	MeJA induced 9h	190.533
SRR8749030	Uninduced	62.485
SRR8749031	Uninduced	33.893
SRR8749032	Uninduced	44.568

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.680
SRR8400027	Control - Root	42.511