Gene detail information of Glyur001180s00029549 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18390.2 | 1.00E-16 | Protein kinase superfamily protein |
| NR | KEH27001.1 | 9.05E-116 | wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula] |
| Swissprot | tr|P0C5E2|Y1839_ARATH | 4.00E-22 | Probable serine/threonine-protein kinase At1g18390 (Precursor) |
| trEMBL | tr|A0A072UC20|A0A072UC20_MEDTR | 3.00E-116 | Wall-associated receptor kinase galacturonan-binding protein {ECO:0000313|EMBL:KEH27001.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01180 | 17751 | 18776 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001180s00029549.1 | PF13947.1 | GUB_WAK_bind | 37 | 127 | 9.80E-11 |
| Glyur001180s00029549.1 | PF14380.1 | WAK_assoc | 151 | 250 | 6.60E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.525 |
| SRR1783600 | control | 0.382 |
| SRR1783602 | moderate drought stress | 0.364 |
| SRR1811619 | moderate drought stress | 0.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.067 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.067 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.502 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.303 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.179 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.683 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.118 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.304 |
| SRR2868004 | Drought Stress (root) | 1.302 |
| SRR2967015 | Control (root) | 1.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.273 |
| SRR9715740 | Leaf | 1.105 |
| SRR9715741 | Leaf | 1.105 |
| SRR9715739 | Root | 0.247 |
| SRR9715742 | Root | 0.226 |
| SRR9715743 | Root | 0.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 59.251 |
| SRR8749028 | MeJA induced 9h | 101.299 |
| SRR8749029 | MeJA induced 9h | 53.520 |
| SRR8749030 | Uninduced | 8.532 |
| SRR8749031 | Uninduced | 8.465 |
| SRR8749032 | Uninduced | 7.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.910 |
| SRR8400027 | Control - Root | 3.022 |