Gene detail information of Glyur001179s00026680 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51010.1 | 7.00E-42 | Rubredoxin-like superfamily protein |
| NR | NP_001236303.1 | 2.04E-87 | uncharacterized protein LOC100500575 [Glycine max] |
| COG | NP_579011.1 | 4.00E-08 | rubredoxin [Pyrococcus furiosus DSM 3638] |
| trEMBL | tr|C6T257|C6T257_SOYBN | 8.00E-88 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU15690.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01179 | 52328 | 55094 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001179s00026680.1 | PF00301.15 | Rubredoxin | 77 | 111 | 1.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.365 |
| SRR1783600 | control | 13.378 |
| SRR1783602 | moderate drought stress | 15.517 |
| SRR1811619 | moderate drought stress | 15.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.229 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.331 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.158 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.051 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.184 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.974 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 178.088 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 177.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.272 |
| SRR2868004 | Drought Stress (root) | 9.162 |
| SRR2967015 | Control (root) | 8.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 61.951 |
| SRR9715740 | Leaf | 99.851 |
| SRR9715741 | Leaf | 38.794 |
| SRR9715739 | Root | 3.546 |
| SRR9715742 | Root | 3.304 |
| SRR9715743 | Root | 2.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.831 |
| SRR8749028 | MeJA induced 9h | 2.662 |
| SRR8749029 | MeJA induced 9h | 2.827 |
| SRR8749030 | Uninduced | 1.551 |
| SRR8749031 | Uninduced | 0.757 |
| SRR8749032 | Uninduced | 2.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.180 |
| SRR8400027 | Control - Root | 18.801 |